RNA–Protein interactions for RNA: ENST00000337841.4

SPTLC1-202, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

TSL 1 (best) BASIC

Gene SPTLC1, Length 946 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-202ENST00000337841 OR51A4Q8NGJ6 313 aa10.07□□□□□ -0.8
SPTLC1-202ENST00000337841 FCGR1BQ92637 280 aa10.07□□□□□ -0.8
SPTLC1-202ENST00000337841 DVL3Q92997 716 aaPredicted RBP10.07□□□□□ -0.8
SPTLC1-202ENST00000337841 ADAT3Q96EY9 351 aaPredicted RBP10.07□□□□□ -0.8
SPTLC1-202ENST00000337841 NR1H4Q96RI1 486 aaPredicted RBP10.07□□□□□ -0.8
SPTLC1-202ENST00000337841 CHST5Q9GZS9 411 aa10.07□□□□□ -0.8
SPTLC1-202ENST00000337841 ZCCHC4Q9H5U6 513 aa10.07□□□□□ -0.8
SPTLC1-202ENST00000337841 PPP1R3EQ9H7J1 279 aa10.07□□□□□ -0.8
SPTLC1-202ENST00000337841 TMEM106BQ9NUM4 274 aa10.07□□□□□ -0.8
SPTLC1-202ENST00000337841 UFSP2Q9NUQ7 469 aa10.07□□□□□ -0.8
SPTLC1-202ENST00000337841 FAM230AA0A1W2PPH8 454 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 TRIM64A6NGJ6 449 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 RP2O75695 350 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 ATF1P18846 271 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 THBS2P35442 1172 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 GPM6AP51674 278 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 ATP1B3P54709 279 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 RIN1Q13671 783 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 TRAM1Q15629 374 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 MPPED2Q15777 294 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 UBE2V2Q15819 145 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 ZNF181Q2M3W8 571 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 Q499Y3 187 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 ARMCX4Q5H9R4 360 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 FAM76BQ5HYJ3 339 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 ZNF573Q86YE8 665 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 PARP16Q8N5Y8 322 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 DNAAF1Q8NEP3 725 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 WFDC11Q8NEX6 87 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 TSPAN14Q8NG11 270 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 ZNF671Q8TAW3 534 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 Q8TCH9 128 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 PGLYRP3Q96LB9 341 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 REG4Q9BYZ8 158 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 VCX3AQ9NNX9 186 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 C1orf123Q9NWV4 160 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 RNF7Q9UBF6 113 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 CACNG2Q9Y698 323 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 SETXQ7Z333 2677 aaKnown RBP10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 TACC2O95359 2948 aa10.06□□□□□ -0.8
SPTLC1-202ENST00000337841 LRBAP50851 2863 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 IGHV4-30-2A0A087WSY4 118 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 TRBV5-5A0A0J9YX44 114 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 hCG_1807616A0A1W2PRN6 198 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 LRP5LA4QPB2 252 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 TMEM178BH3BS89 294 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 MAGEB3O15480 346 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 ALX3O95076 343 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 CPEP16870 476 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 RAB3AP20336 220 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 PSMA1P25786 263 aaKnown RBP10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 MAPK3P27361 379 aaPredicted RBP10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 PMELP40967 661 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 NR4A2P43354 598 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 RBP2P50120 134 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 ACSM3Q53FZ2 586 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 UBE2UQ5VVX9 321 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 LIPKQ5VXJ0 399 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 SPNS3Q6ZMD2 512 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 TGIF2LYQ8IUE0 185 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 KRTAP1-3Q8IUG1 177 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 ZNF420Q8TAQ5 688 aaPredicted RBP10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 HPSE2Q8WWQ2 592 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 RGP1Q92546 391 aaPredicted RBP10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 RPL3LQ92901 407 aaKnown RBP10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 TMEM106AQ96A25 262 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 SPSB1Q96BD6 273 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 BORCS8Q96FH0 119 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 TMED9Q9BVK6 235 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 OR51I2Q9H344 312 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 ZNF696Q9H7X3 374 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 CKLFQ9UBR5 152 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 NPTNQ9Y639 398 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 ARFGEF3Q5TH69 2177 aa10.05□□□□□ -0.8
SPTLC1-202ENST00000337841 PDZD2O15018 2839 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 PPIAL4EA0A075B759 164 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 PQLC2LA1A4F0 135 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 VWC2LB2RUY7 222 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 ZNF879B4DU55 563 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 PPIAL4DF5H284 164 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 CDIPTO14735 213 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 CYB5R3P00387 301 aaPredicted RBP10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 PPIAL4FP0DN26 164 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 PCMT1P22061 227 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 USF1P22415 310 aaPredicted RBP10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 PSMB9P28065 219 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 CFHR2P36980 270 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 TGFBR2P37173 567 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 MTCP1P56278 107 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 RPS11P62280 158 aaKnown RBP eCLIP10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 PPP3R1P63098 170 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 ZNF154Q13106 437 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 DMRTC1Q5HYR2 192 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 UNQ9370/PRO34162Q6UXP9 181 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 ZNF826PQ6ZT77 177 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 LHFPL2Q6ZUX7 228 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 WDR86Q86TI4 376 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 PHC2Q8IXK0 858 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 C11orf53Q8IXP5 236 aa10.04□□□□□ -0.8
SPTLC1-202ENST00000337841 BOLLQ8N9W6 283 aaKnown RBP10.04□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms