RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 CEACAM21Q3KPI0 293 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 HSD17B12Q53GQ0 312 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 FAM27D1Q5T7N8 215 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 GPR107Q5VW38 600 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 ZNF787Q6DD87 383 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 HIST2H2BCQ6DN03 193 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 MOB3CQ70IA8 216 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 SPERTQ8NA61 448 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 GTF3AQ92664 365 aaKnown RBP12.22□□□□□ -0.45
UPF1-211ENST00000600868 ITPKCQ96DU7 683 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 CHCHD6Q9BRQ6 235 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 ADAT1Q9BUB4 502 aaKnown RBP12.22□□□□□ -0.45
UPF1-211ENST00000600868 PPP1R3EQ9H7J1 279 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 EXOSC4Q9NPD3 245 aaKnown RBP12.22□□□□□ -0.45
UPF1-211ENST00000600868 GPR173Q9NS66 373 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 TAS2R4Q9NYW5 299 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 GSTK1Q9Y2Q3 226 aa12.22□□□□□ -0.45
UPF1-211ENST00000600868 PTPN13Q12923 2485 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 TRAV8-7A0A075B6U6 113 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 IGKV1-9A0A0C4DH69 117 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP12.21□□□□□ -0.45
UPF1-211ENST00000600868 C17orf100A8MU93 164 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 SULT1B1O43704 296 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 GABARAPO95166 117 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 IGHV1-46P01743 117 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 ATF1P18846 271 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 SRMP19623 302 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 RAB3AP20336 220 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 PPP3R1P63098 170 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 MZT1Q08AG7 82 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 CNN3Q15417 329 aaKnown RBP12.21□□□□□ -0.45
UPF1-211ENST00000600868 CEP78Q5JTW2 689 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 PLCXD3Q63HM9 321 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 C22orf42Q6IC83 251 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 SLC16A12Q6ZSM3 486 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 OR2Z1Q8NG97 314 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 OR1M1Q8NGA1 313 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 OR5A2Q8NGI9 324 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 HPSE2Q8WWQ2 592 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 IGFBPL1Q8WX77 278 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 OR5P3Q8WZ94 311 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 RPL3LQ92901 407 aaKnown RBP12.21□□□□□ -0.45
UPF1-211ENST00000600868 SPSB1Q96BD6 273 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 ORAI1Q96D31 301 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 HIST1H2AAQ96QV6 131 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 CENPOQ9BU64 300 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 NEK6Q9HC98 313 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 DYNLRB1Q9NP97 96 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 NKIRAS2Q9NYR9 191 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 SLC7A11Q9UPY5 501 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 LAMP3Q9UQV4 416 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 PMF1-BGLAPU3KQ54 211 aa12.21□□□□□ -0.45
UPF1-211ENST00000600868 CRYBG3Q68DQ2 2970 aa12.21□□□□□ -0.46
UPF1-211ENST00000600868 TRAV1-2A0A0B4J238 106 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 LOC100506127A0A0U1RQW1 187 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 MEGF11A6BM72 1044 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 OR5B21A6NL26 309 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 H0YL77 283 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 SPRY3O43610 288 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 ALDOBP05062 364 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 CD55P08174 381 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 PRKACBP22694 351 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 TNFSF4P23510 183 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 CALRP27797 417 aaKnown RBP12.2□□□□□ -0.46
UPF1-211ENST00000600868 FUT6P51993 359 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 PCGF3Q3KNV8 242 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 FAM209AQ5JX71 171 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 CLVS1Q8IUQ0 354 aaPredicted RBP12.2□□□□□ -0.46
UPF1-211ENST00000600868 DNAAF1Q8NEP3 725 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 OR10AD1Q8NGE0 317 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 OR13C9Q8NGT0 318 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 OR8S1Q8NH09 359 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 DVL3Q92997 716 aaPredicted RBP12.2□□□□□ -0.46
UPF1-211ENST00000600868 ELMOD3Q96FG2 381 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 KCTD7Q96MP8 289 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 MICU1Q9BPX6 476 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 BCL7BQ9BQE9 202 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 NAA50Q9GZZ1 169 aaKnown RBP12.2□□□□□ -0.46
UPF1-211ENST00000600868 CXXC4Q9H2H0 198 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 TCF7L1Q9HCS4 588 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 TMEM138Q9NPI0 162 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 SNTG1Q9NSN8 517 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 ARFGEF3Q5TH69 2177 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 LRBAP50851 2863 aa12.2□□□□□ -0.46
UPF1-211ENST00000600868 PQLC2LA1A4F0 135 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 H7C417 338 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 OVOL3O00110 214 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 PTBP3O95758 552 aaKnown RBP12.19□□□□□ -0.46
UPF1-211ENST00000600868 ERCC1P07992 297 aaPredicted RBP12.19□□□□□ -0.46
UPF1-211ENST00000600868 PRF1P14222 555 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 MYL9P24844 172 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 AZGP1P25311 298 aaKnown RBP12.19□□□□□ -0.46
UPF1-211ENST00000600868 BDKRB2P30411 391 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 CD200P41217 278 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 TMBIM6P55061 237 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 GNG3P63215 75 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 CTF1Q16619 201 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 FAM76BQ5HYJ3 339 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 LRRTM1Q86UE6 522 aa12.19□□□□□ -0.46
UPF1-211ENST00000600868 CELF2-AS1Q8N7Q2 184 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms