RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 PSMB9P28065 219 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 PTH2RP49190 550 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 SRP9P49458 86 aaKnown RBP14.54□□□□□ -0.08
LIG1-204ENST00000542460 RPS11P62280 158 aaKnown RBP eCLIP14.54□□□□□ -0.08
LIG1-204ENST00000542460 MZT1Q08AG7 82 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 Q499Y3 187 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 SYT6Q5T7P8 510 aaPredicted RBP14.54□□□□□ -0.08
LIG1-204ENST00000542460 PHC2Q8IXK0 858 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 ZDHHC23Q8IYP9 409 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 LRRC75A-AS1Q8N1F1 130 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 ITPKCQ96DU7 683 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 ADAT3Q96EY9 351 aaPredicted RBP14.54□□□□□ -0.08
LIG1-204ENST00000542460 CHST5Q9GZS9 411 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 PPP1R3EQ9H7J1 279 aa14.54□□□□□ -0.08
LIG1-204ENST00000542460 BARX1Q9HBU1 254 aaPredicted RBP14.54□□□□□ -0.08
LIG1-204ENST00000542460 TRBV5-5A0A0J9YX44 114 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 ANKRD61A6NGH8 418 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 NDUFS7O75251 213 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 TNFRSF1AP19438 455 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 SOX2P48431 317 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 ATP5J2P56134 94 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 TESK1Q15569 626 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 TRAM1Q15629 374 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 MOB3CQ70IA8 216 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 SERPINA12Q8IW75 414 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 PARP16Q8N5Y8 322 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 CELF2-AS1Q8N7Q2 184 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 OR13C5Q8NGS8 318 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 UBASH3BQ8TF42 649 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 OR5P3Q8WZ94 311 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 DVL3Q92997 716 aaPredicted RBP14.53□□□□□ -0.08
LIG1-204ENST00000542460 TMEM106AQ96A25 262 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 PERPQ96FX8 193 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 OR2V2Q96R30 315 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 MICU1Q9BPX6 476 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 TMED9Q9BVK6 235 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 CXXC4Q9H2H0 198 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 SAP30LQ9HAJ7 183 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 C14orf119Q9NWQ9 140 aa14.53□□□□□ -0.08
LIG1-204ENST00000542460 GATBO75879 557 aaKnown RBP14.52□□□□□ -0.08
LIG1-204ENST00000542460 NCR1O76036 304 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 IGHV4-39P01824 125 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 HPXP02790 462 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 PSMA1P25786 263 aaKnown RBP14.52□□□□□ -0.08
LIG1-204ENST00000542460 CD200P41217 278 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 MAB21L1Q13394 359 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 CEACAM21Q3KPI0 293 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 CEP78Q5JTW2 689 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 PLCXD3Q63HM9 321 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 UTS2BQ765I0 119 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 OR5D14Q8NGL3 314 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 THRSPQ92748 146 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 MUL1Q969V5 352 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 MEGF10Q96KG7 1140 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 TECTBQ96PL2 329 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 RTL8AQ9BWD3 113 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 GPR173Q9NS66 373 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 ARFGEF3Q5TH69 2177 aa14.52□□□□□ -0.08
LIG1-204ENST00000542460 ZNF879B4DU55 563 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 CCRL2O00421 344 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 MAPK3P27361 379 aaPredicted RBP14.51□□□□□ -0.09
LIG1-204ENST00000542460 SSX1Q16384 188 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 OR5A2Q8NGI9 324 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 ITLN1Q8WWA0 313 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 TMEM203Q969S6 136 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 RNF170Q96K19 258 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 OR14A2Q96R54 314 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 NDUFB11Q9NX14 153 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 SF3B6Q9Y3B4 125 aaKnown RBP14.51□□□□□ -0.09
LIG1-204ENST00000542460 PDZD2O15018 2839 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 LOC100289279A0A1B0GTE1 492 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 PTBP3O95758 552 aaKnown RBP14.51□□□□□ -0.09
LIG1-204ENST00000542460 SMIM18P0DKX4 95 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 DAOP14920 347 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 JUNBP17275 347 aaPredicted RBP14.51□□□□□ -0.09
LIG1-204ENST00000542460 GABRA5P31644 462 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 CRYBB2P43320 205 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 GATA4P43694 442 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 GP2P55259 537 aaKnown RBP14.51□□□□□ -0.09
LIG1-204ENST00000542460 MRPS11P82912 194 aaKnown RBP14.51□□□□□ -0.09
LIG1-204ENST00000542460 UBE2V2Q15819 145 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 ACSM3Q53FZ2 586 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 SPRNQ5BIV9 151 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 HPSE2Q8WWQ2 592 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 RDH5Q92781 318 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 MRPS26Q9BYN8 205 aaKnown RBP14.51□□□□□ -0.09
LIG1-204ENST00000542460 ZCCHC4Q9H5U6 513 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 SLC7A11Q9UPY5 501 aa14.51□□□□□ -0.09
LIG1-204ENST00000542460 OR5B21A6NL26 309 aa14.5□□□□□ -0.09
LIG1-204ENST00000542460 SSX4O60224 188 aa14.5□□□□□ -0.09
LIG1-204ENST00000542460 SC5DO75845 299 aa14.5□□□□□ -0.09
LIG1-204ENST00000542460 LY6HO94772 140 aa14.5□□□□□ -0.09
LIG1-204ENST00000542460 RPS25P62851 125 aaKnown RBP14.5□□□□□ -0.09
LIG1-204ENST00000542460 CNN3Q15417 329 aaKnown RBP14.5□□□□□ -0.09
LIG1-204ENST00000542460 DMRTC1Q5HYR2 192 aa14.5□□□□□ -0.09
LIG1-204ENST00000542460 UNQ9370/PRO34162Q6UXP9 181 aa14.5□□□□□ -0.09
LIG1-204ENST00000542460 ERGIC1Q969X5 290 aa14.5□□□□□ -0.09
LIG1-204ENST00000542460 MYOZ1Q9NP98 299 aaPredicted RBP14.5□□□□□ -0.09
LIG1-204ENST00000542460 PPP1R3CQ9UQK1 317 aa14.5□□□□□ -0.09
LIG1-204ENST00000542460 USF3Q68DE3 2245 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms