RNA–Protein interactions for RNA: ENST00000341485.9

TPM3-208, Transcript of tropomyosin 3, humanhuman

TSL 1 (best) BASIC

Gene TPM3, Length 2,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-208ENST00000341485 NAA11Q9BSU3 229 aaPredicted RBP13.16□□□□□ -0.3
TPM3-208ENST00000341485 CST11Q9H112 138 aa13.16□□□□□ -0.3
TPM3-208ENST00000341485 KLF13Q9Y2Y9 288 aaPredicted RBP13.16□□□□□ -0.3
TPM3-208ENST00000341485 MRPS18CQ9Y3D5 142 aaKnown RBP13.16□□□□□ -0.3
TPM3-208ENST00000341485 ZFHX2Q9C0A1 2572 aaPredicted RBP13.15□□□□□ -0.3
TPM3-208ENST00000341485 OR2AT4A6NND4 320 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 TNFSF11O14788 317 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 VAMP5O95183 116 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 CRYZL1O95825 349 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 SP1P08047 785 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 CD46P15529 392 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 ZNF250P15622 560 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 RPA2P15927 270 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 RFC3P40938 356 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 B3GALT5-AS1P59052 145 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 PPP1R1AQ13522 171 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 DMRTC1Q5HYR2 192 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 LYG2Q86SG7 212 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 ZIC4Q8N9L1 334 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 GJC3Q8NFK1 279 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 WBP1Q96G27 269 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 SRXN1Q9BYN0 137 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 ANAPC10Q9UM13 185 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 PLEKHA6Q9Y2H5 1048 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 NOP16Q9Y3C1 178 aaKnown RBP13.15□□□□□ -0.3
TPM3-208ENST00000341485 CFAP54Q96N23 3096 aa13.15□□□□□ -0.3
TPM3-208ENST00000341485 DHHO43323 396 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 IL2RAP01589 272 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 CD8AP01732 235 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 PMP2P02689 132 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 HIST1H1DP16402 221 aaKnown RBP13.14□□□□□ -0.31
TPM3-208ENST00000341485 GUCA1AP43080 201 aaPredicted RBP13.14□□□□□ -0.31
TPM3-208ENST00000341485 TMEM50BP56557 158 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 HIST1H3AP68431 136 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 SRSF4Q08170 494 aaKnown RBP13.14□□□□□ -0.31
TPM3-208ENST00000341485 FOXC1Q12948 553 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 RSPO1Q2MKA7 263 aaPredicted RBP13.14□□□□□ -0.31
TPM3-208ENST00000341485 HIST2H3PS2Q5TEC6 136 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 CRIP3Q6Q6R5 217 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 ALKAL2Q6UX46 152 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 GSG1LQ6UXU4 331 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 HIST2H3AQ71DI3 136 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 GALNTL5Q7Z4T8 443 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 LRRC18Q8N456 261 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 MDS2Q8NDY4 140 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 GPER1Q99527 375 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 TMEM59Q9BXS4 323 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 MFFQ9GZY8 342 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 ZNF552Q9H707 407 aaPredicted RBP13.14□□□□□ -0.31
TPM3-208ENST00000341485 FN3KRPQ9HA64 309 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 FOXD3Q9UJU5 478 aaPredicted RBP13.14□□□□□ -0.31
TPM3-208ENST00000341485 NCKAP5O14513 1909 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 F5H5K5 113 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 KLRC4-KLRK1H3BQV0 150 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 CCSO14618 274 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 NME2P1O60361 137 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 RAD51DO75771 328 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 GSTP1P09211 210 aaKnown RBP13.14□□□□□ -0.31
TPM3-208ENST00000341485 PRF1P14222 555 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 TBPP20226 339 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 NME2P22392 152 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 MEOX1P50221 254 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 DEFB109BQ30KR1 87 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 ADAD2Q8NCV1 583 aaKnown RBP13.14□□□□□ -0.31
TPM3-208ENST00000341485 RAB3CQ96E17 227 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 RBM24Q9BX46 236 aaKnown RBP13.14□□□□□ -0.31
TPM3-208ENST00000341485 TTTY12Q9BZ98 90 aa13.14□□□□□ -0.31
TPM3-208ENST00000341485 ZNF703Q9H7S9 590 aaPredicted RBP13.14□□□□□ -0.31
TPM3-208ENST00000341485 TMA7Q9Y2S6 64 aaKnown RBP13.14□□□□□ -0.31
TPM3-208ENST00000341485 MED13Q9UHV7 2174 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 C9orf170A2RU37 121 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 FAM166BA8MTA8 275 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 CRTAPO75718 401 aaPredicted RBP13.13□□□□□ -0.31
TPM3-208ENST00000341485 NAT1P18440 290 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 SLC6A9P48067 706 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 SUCLG1P53597 346 aaKnown RBP13.13□□□□□ -0.31
TPM3-208ENST00000341485 GK2Q14410 553 aaPredicted RBP13.13□□□□□ -0.31
TPM3-208ENST00000341485 FAM209AQ5JX71 171 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 LIN54Q6MZP7 749 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 LPCAT3Q6P1A2 487 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 OR4K15Q8NH41 348 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 SCARB1Q8WTV0 552 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 ST8SIA4Q92187 359 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 HAS2Q92819 552 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 ZNF837Q96EG3 531 aaPredicted RBP13.13□□□□□ -0.31
TPM3-208ENST00000341485 V9GYS6 101 aa13.13□□□□□ -0.31
TPM3-208ENST00000341485 RIF1Q5UIP0 2472 aaKnown RBP13.13□□□□□ -0.31
TPM3-208ENST00000341485 A0A0U1RQV5 110 aa13.12□□□□□ -0.31
TPM3-208ENST00000341485 NMBP08949 121 aa13.12□□□□□ -0.31
TPM3-208ENST00000341485 MPGP29372 298 aa13.12□□□□□ -0.31
TPM3-208ENST00000341485 CALCRP30988 508 aa13.12□□□□□ -0.31
TPM3-208ENST00000341485 THBS4P35443 961 aa13.12□□□□□ -0.31
TPM3-208ENST00000341485 ECH1Q13011 328 aa13.12□□□□□ -0.31
TPM3-208ENST00000341485 MICBQ29980 383 aa13.12□□□□□ -0.31
TPM3-208ENST00000341485 C1QL2Q7Z5L3 287 aa13.12□□□□□ -0.31
TPM3-208ENST00000341485 C20orf196Q8IYI0 205 aa13.12□□□□□ -0.31
TPM3-208ENST00000341485 FDCSPQ8NFU4 85 aa13.12□□□□□ -0.31
TPM3-208ENST00000341485 COQ8AQ8NI60 647 aa13.12□□□□□ -0.31
TPM3-208ENST00000341485 NPRL2Q8WTW4 380 aa13.12□□□□□ -0.31
TPM3-208ENST00000341485 ARHGAP5-AS1Q96IT6 56 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms