RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 FOXB2Q5VYV0 432 aa9.21□□□□□ -0.93
SS18-213ENST00000579640 TMEM42Q69YG0 159 aa9.21□□□□□ -0.93
SS18-213ENST00000579640 OR2T2Q6IF00 324 aa9.21□□□□□ -0.93
SS18-213ENST00000579640 TPRA1Q86W33 373 aa9.21□□□□□ -0.93
SS18-213ENST00000579640 PIK3IP1Q96FE7 263 aa9.21□□□□□ -0.93
SS18-213ENST00000579640 PPIL3Q9H2H8 161 aaKnown RBP9.21□□□□□ -0.93
SS18-213ENST00000579640 ABCB9Q9NP78 766 aa9.21□□□□□ -0.93
SS18-213ENST00000579640 MRPL15Q9P015 296 aaKnown RBP9.21□□□□□ -0.93
SS18-213ENST00000579640 PURGQ9UJV8 347 aaKnown RBP9.21□□□□□ -0.93
SS18-213ENST00000579640 IGLV3-9A0A075B6K5 115 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 MEGF11A6BM72 1044 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 ANKRD61A6NGH8 418 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 LMX1BO60663 402 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 IL1AP01583 271 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 IGHV3-13P01766 116 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 IGFBP3P17936 291 aaPredicted RBP9.21□□□□□ -0.94
SS18-213ENST00000579640 RAB3AP20336 220 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 MPV17P39210 176 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 SERPINB10P48595 397 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 FABP6P51161 128 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 PSMD7P51665 324 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 KLF3P57682 345 aaPredicted RBP9.21□□□□□ -0.94
SS18-213ENST00000579640 CNN3Q15417 329 aaKnown RBP9.21□□□□□ -0.94
SS18-213ENST00000579640 ZNF529Q6P280 563 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 MRPL24Q96A35 216 aaKnown RBP9.21□□□□□ -0.94
SS18-213ENST00000579640 SLC22A4Q9H015 551 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 RNF167Q9H6Y7 350 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 TAS2R4Q9NYW5 299 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 CGGBP1Q9UFW8 167 aaPredicted RBP9.21□□□□□ -0.94
SS18-213ENST00000579640 MPC1Q9Y5U8 109 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 CADP27708 2225 aa9.21□□□□□ -0.94
SS18-213ENST00000579640 TRIM64BA6NI03 449 aa9.2□□□□□ -0.94
SS18-213ENST00000579640 SULT1B1O43704 296 aa9.2□□□□□ -0.94
SS18-213ENST00000579640 TIMM8AO60220 97 aaPredicted RBP9.2□□□□□ -0.94
SS18-213ENST00000579640 CDRT1O95170 752 aa9.2□□□□□ -0.94
SS18-213ENST00000579640 ERCC1P07992 297 aaPredicted RBP9.2□□□□□ -0.94
SS18-213ENST00000579640 EVX1P49640 407 aa9.2□□□□□ -0.94
SS18-213ENST00000579640 ASPHD2Q6ICH7 369 aa9.2□□□□□ -0.94
SS18-213ENST00000579640 VHLLQ6RSH7 139 aa9.2□□□□□ -0.94
SS18-213ENST00000579640 NKAIN3Q8N8D7 197 aa9.2□□□□□ -0.94
SS18-213ENST00000579640 OR1M1Q8NGA1 313 aa9.2□□□□□ -0.94
SS18-213ENST00000579640 PAPOLGQ9BWT3 736 aaKnown RBP9.2□□□□□ -0.94
SS18-213ENST00000579640 DCSTAMPQ9H295 470 aa9.2□□□□□ -0.94
SS18-213ENST00000579640 TMEM138Q9NPI0 162 aa9.2□□□□□ -0.94
SS18-213ENST00000579640 NOP16Q9Y3C1 178 aaKnown RBP9.2□□□□□ -0.94
SS18-213ENST00000579640 TRAV8-7A0A075B6U6 113 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 A6NIN4 97 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 E7EQL1 145 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 GMDSO60547 372 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 NRASP01111 189 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 ATF1P18846 271 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 PRKACBP22694 351 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 BDKRB2P30411 391 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 APOBEC3AP31941 199 aaPredicted RBP9.19□□□□□ -0.94
SS18-213ENST00000579640 SDC2P34741 201 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 PRSS12P56730 875 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 SPCS2Q15005 226 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 ZNF672Q499Z4 452 aaPredicted RBP9.19□□□□□ -0.94
SS18-213ENST00000579640 CDH26Q8IXH8 852 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 OR8G5Q8NG78 346 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 OR13C9Q8NGT0 318 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 UBASH3BQ8TF42 649 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 PIGCQ92535 297 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 SPSB1Q96BD6 273 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 ORAI1Q96D31 301 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 HS3ST6Q96QI5 342 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 DHRS9Q9BPW9 319 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 CYSLTR2Q9NS75 346 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 DUSP13Q9UII6 198 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 GPR160Q9UJ42 338 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 RHBDD3Q9Y3P4 386 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 USP9XQ93008 2570 aaPredicted RBP9.19□□□□□ -0.94
SS18-213ENST00000579640 SHISA3A0PJX4 238 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 ANXA2P2A6NMY6 339 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 A6NNC1 897 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 MAGEB3O15480 346 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 ALDOBP05062 364 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 OR4A8P0C604 315 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 OCMP0CE72 109 aaPredicted RBP9.19□□□□□ -0.94
SS18-213ENST00000579640 RAB3BP20337 219 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 TGFBR1P36897 503 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 RANBP1P43487 201 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 PRDX4Q13162 271 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 ADIPOQQ15848 244 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 MSMPQ1L6U9 139 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 LRRTM1Q86UE6 522 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 CROCCP3Q8IVE0 287 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 ZDHHC23Q8IYP9 409 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 OR5AS1Q8N127 324 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 BHLHE23Q8NDY6 225 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 NDNFQ8TB73 568 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 FOXRED1Q96CU9 486 aaPredicted RBP9.19□□□□□ -0.94
SS18-213ENST00000579640 CPNE2Q96FN4 548 aaPredicted RBP9.19□□□□□ -0.94
SS18-213ENST00000579640 HIST1H2AAQ96QV6 131 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 SLC30A2Q9BRI3 323 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 MRPL37Q9BZE1 423 aaKnown RBP9.19□□□□□ -0.94
SS18-213ENST00000579640 PLK3Q9H4B4 646 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 GPR173Q9NS66 373 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 TMEM100Q9NV29 134 aa9.19□□□□□ -0.94
SS18-213ENST00000579640 CISD1Q9NZ45 108 aaKnown RBP9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms