RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 TRAF3IP2O43734 574 aaPredicted RBP11.82□□□□□ -0.52
PTPRF-215ENST00000496447 CDK5R1Q15078 307 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 PWWP2BQ6NUJ5 590 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 CT55Q8WUE5 264 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 LHX9Q9NQ69 397 aa11.82□□□□□ -0.52
PTPRF-215ENST00000496447 TCRBV5S2A0A599 114 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 CCSO14618 274 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 TSEN54Q7Z6J9 526 aaKnown RBP11.81□□□□□ -0.52
PTPRF-215ENST00000496447 OR5M8Q8NGP6 311 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 ZNF75AQ96N20 296 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 MTCH1Q9NZJ7 389 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 ONECUT1Q9UBC0 465 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 A4GNTQ9UNA3 340 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 MTCH2Q9Y6C9 303 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 ECM29Q5VYK3 1845 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 A0A1W2PR80 420 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 SDCBPO00560 298 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-215ENST00000496447 TAAR5O14804 337 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 ZNF793Q6ZN11 406 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 OSR2Q8N2R0 312 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 LINC01555Q8NAE3 123 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 EDARADDQ8WWZ3 215 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 TRAF4Q9BUZ4 470 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-215ENST00000496447 NKX2-2O95096 273 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 SBK3P0C264 359 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 FAHP16930 419 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 G0S2P27469 103 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 EVX1P49640 407 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 RHOUQ7L0Q8 258 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 PNPLA5Q7Z6Z6 429 aaPredicted RBP11.81□□□□□ -0.52
PTPRF-215ENST00000496447 OR13C8Q8NGS7 320 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 ADAT1Q9BUB4 502 aaKnown RBP11.81□□□□□ -0.52
PTPRF-215ENST00000496447 COL18A1P39060 1754 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 OR2B8PP59922 312 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 UBE2G1P62253 170 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 GPR37O15354 613 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 HLA-HP01893 362 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 FGF7P21781 194 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 TGFBR1P36897 503 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 PCBP4P57723 403 aaKnown RBP11.81□□□□□ -0.52
PTPRF-215ENST00000496447 RANP62826 216 aaKnown RBP11.81□□□□□ -0.52
PTPRF-215ENST00000496447 C2orf76Q3KRA6 126 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 ALG14Q96F25 216 aa11.81□□□□□ -0.52
PTPRF-215ENST00000496447 TOX3O15405 576 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-215ENST00000496447 SPRY1O43609 319 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-215ENST00000496447 ADRA2CP18825 462 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 ACKR3P25106 362 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 H3F3AP84243 136 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 SPANXN5Q5MJ07 72 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 PRSS41Q7RTY9 318 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 ARHGDIGQ99819 225 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 ESRP2Q9H6T0 727 aaKnown RBP11.8□□□□□ -0.52
PTPRF-215ENST00000496447 TAF9BQ9HBM6 251 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 ATF1P18846 271 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 FCGR2CP31995 323 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 FZD5Q13467 585 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 TPBGQ13641 420 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 ZNF239Q16600 458 aaKnown RBP11.8□□□□□ -0.52
PTPRF-215ENST00000496447 PDZD11Q5EBL8 140 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 STAC2Q6ZMT1 411 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 CXorf67Q86X51 503 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-215ENST00000496447 OR2G3Q8NGZ4 309 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 NUDCD2Q8WVJ2 157 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 APH1BQ8WW43 257 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 OR2A5Q96R48 311 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 MT-ND4LP03901 98 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 SOX18P35713 384 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 RAB35Q15286 201 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 SLC36A1Q7Z2H8 476 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 PLA2G12AQ9BZM1 189 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 NMES1Q9C002 83 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 ZFP92A6NM28 416 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 C5orf67F2Z3F1 127 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 OR5G3P0C626 314 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 MOB3BQ86TA1 216 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 RIMKLAQ8IXN7 391 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 OR8D4Q8NGM9 314 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 OR2G2Q8NGZ5 317 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 TRMT61AQ96FX7 289 aaKnown RBP11.8□□□□□ -0.52
PTPRF-215ENST00000496447 RNF150Q9ULK6 438 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 UMAD1C9J7I0 102 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 AQP8O94778 261 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 THBS4P35443 961 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 XAF1Q6GPH4 301 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 SFTPA1Q8IWL2 248 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 TMEM104Q8NE00 496 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 LILRB1Q8NHL6 650 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-215ENST00000496447 TAAR6Q96RI8 345 aa11.8□□□□□ -0.52
PTPRF-215ENST00000496447 MYOZ1Q9NP98 299 aaPredicted RBP11.8□□□□□ -0.52
PTPRF-215ENST00000496447 ZNF98A6NK75 572 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 PPIHO43447 177 aaKnown RBP11.79□□□□□ -0.52
PTPRF-215ENST00000496447 NQO2P16083 231 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 NKG7Q16617 165 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 GALMQ96C23 342 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 LAMA4Q16363 1823 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 CT45A10P0DMU9 189 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 DMRTC1Q5HYR2 192 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 SMRP1Q8NCR6 262 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 C20orf24Q9BUV8 137 aa11.79□□□□□ -0.52
PTPRF-215ENST00000496447 ZNF391Q9UJN7 358 aa11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms