RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 ZCCHC4Q9H5U6 513 aa8.67□□□□□ -1.02
CD44-207ENST00000425428 SIRT4Q9Y6E7 314 aaPredicted RBP8.67□□□□□ -1.02
CD44-207ENST00000425428 FLNCQ14315 2725 aa8.67□□□□□ -1.02
CD44-207ENST00000425428 USP9XQ93008 2570 aaPredicted RBP8.67□□□□□ -1.02
CD44-207ENST00000425428 ABCA4P78363 2273 aa8.67□□□□□ -1.02
CD44-207ENST00000425428 ANKRD61A6NGH8 418 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 E7EQL1 145 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 GABRPO00591 440 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 CYB5AP00167 134 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 HCKP08631 526 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 FAHP16930 419 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 TGFBR2P37173 567 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 ALDH3B2P48448 385 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 ZNF81P51508 661 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 BLMHQ13867 455 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 ADIPOQQ15848 244 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 FAM209AQ5JX71 171 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 GPR107Q5VW38 600 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 MOB3CQ70IA8 216 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 CLVS1Q8IUQ0 354 aaPredicted RBP8.66□□□□□ -1.02
CD44-207ENST00000425428 PNLDC1Q8NA58 520 aaKnown RBP8.66□□□□□ -1.02
CD44-207ENST00000425428 PLPP7Q8NBV4 271 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 ACBD4Q8NC06 268 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 OR14K1Q8NGZ2 314 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 RAB2BQ8WUD1 216 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 C14orf79Q96F83 325 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 GPER1Q99527 375 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 S100A13Q99584 98 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 BCL7BQ9BQE9 202 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 RTL8AQ9BWD3 113 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 FUNDC2Q9BWH2 189 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 DECR2Q9NUI1 292 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 ZNF319Q9P2F9 582 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 FOXJ3Q9UPW0 622 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 LRRK2Q5S007 2527 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 TRBV5-5A0A0J9YX44 114 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 A0A1B0GTI1 187 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 SMIM31A0A1B0GVY4 71 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 CTAG2O75638 210 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 CST4P01036 141 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 IGLV3-1P01715 115 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 GADD45AP24522 165 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 CALRP27797 417 aaKnown RBP8.66□□□□□ -1.02
CD44-207ENST00000425428 FGF9P31371 208 aaPredicted RBP8.66□□□□□ -1.02
CD44-207ENST00000425428 MPV17P39210 176 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 SRP9P49458 86 aaKnown RBP8.66□□□□□ -1.02
CD44-207ENST00000425428 TMBIM6P55061 237 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 EFNB3Q15768 340 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 SSX1Q16384 188 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 PCGF3Q3KNV8 242 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 UTS2BQ765I0 119 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 SATL1Q86VE3 508 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 ANKRD13BQ86YJ7 626 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 PARP16Q8N5Y8 322 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 ZNF611Q8N823 705 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 MARVELD3Q96A59 401 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 SPSB1Q96BD6 273 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 FOXRED1Q96CU9 486 aaPredicted RBP8.66□□□□□ -1.02
CD44-207ENST00000425428 YIPF6Q96EC8 236 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 BORCS8Q96FH0 119 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 LYZL4Q96KX0 146 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 PSMG3-AS1Q96PY0 264 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 HS3ST6Q96QI5 342 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 ADAT1Q9BUB4 502 aaKnown RBP8.66□□□□□ -1.02
CD44-207ENST00000425428 MRPL37Q9BZE1 423 aaKnown RBP8.66□□□□□ -1.02
CD44-207ENST00000425428 CHST5Q9GZS9 411 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 RAB1BQ9H0U4 201 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 NOX4Q9NPH5 578 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 SNTG1Q9NSN8 517 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 CBLN4Q9NTU7 201 aa8.66□□□□□ -1.02
CD44-207ENST00000425428 DSCAMO60469 2012 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 IGLV3-9A0A075B6K5 115 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 OR5B21A6NL26 309 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 ZNF850A8MQ14 1090 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 SULT1B1O43704 296 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 PLAUP00749 431 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 TNFRSF1AP19438 455 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 SRMP19623 302 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 CA6P23280 308 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 FUT6P51993 359 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 ATP1B3P54709 279 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 FABP5Q01469 135 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 PRDX4Q13162 271 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 GLT8D1Q68CQ7 371 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 C22orf42Q6IC83 251 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 LHFPL2Q6ZUX7 228 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 TPRA1Q86W33 373 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 CROCCP3Q8IVE0 287 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 NKAIN3Q8N8D7 197 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 OR2Z1Q8NG97 314 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 OR5A2Q8NGI9 324 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 OR51A4Q8NGJ6 313 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 ZNF420Q8TAQ5 688 aaPredicted RBP8.65□□□□□ -1.02
CD44-207ENST00000425428 DERL3Q96Q80 235 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 VRK1Q99986 396 aaPredicted RBP8.65□□□□□ -1.02
CD44-207ENST00000425428 POFUT1Q9H488 388 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 CXorf56Q9H5V9 222 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 TMEM138Q9NPI0 162 aa8.65□□□□□ -1.02
CD44-207ENST00000425428 ROS1P08922 2347 aa8.64□□□□□ -1.03
CD44-207ENST00000425428 A0A1W2PPK0 400 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms