RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 ZNRF4Q8WWF5 429 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 NSMAFQ92636 917 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 ABTB1Q969K4 478 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-201ENST00000355766 MCHR2Q969V1 340 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 TXNDC15Q96J42 360 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 C4orf45Q96LM5 186 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 TRIB1Q96RU8 372 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 TBX5Q99593 518 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 ABHD6Q9BV23 337 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 TMED9Q9BVK6 235 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 SFXN3Q9BWM7 321 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 SRXN1Q9BYN0 137 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 KRTAP9-8Q9BYQ0 159 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 POLE4Q9NR33 117 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 SNTG1Q9NSN8 517 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF701Q9NV72 531 aaPredicted RBP6.03□□□□□ -1.44
VPS13A-201ENST00000355766 NDRG3Q9UGV2 375 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 ZNF391Q9UJN7 358 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 IKZF2Q9UKS7 526 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 UGT2A1Q9Y4X1 527 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 R4GMQ9 66 aa6.03□□□□□ -1.44
VPS13A-201ENST00000355766 A0A1W2PRX2 142 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 TVP23AA6NH52 213 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 DHRS7CA6NNS2 312 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 A8MV72 311 aaPredicted RBP6.02□□□□□ -1.45
VPS13A-201ENST00000355766 KCNAB3O43448 404 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 SPRY1O43609 319 aaPredicted RBP6.02□□□□□ -1.45
VPS13A-201ENST00000355766 CXCL13O43927 109 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 SRSF10O75494 262 aaKnown RBP6.02□□□□□ -1.45
VPS13A-201ENST00000355766 ZFPL1O95159 310 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 CD2P06729 351 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 CST2P09228 141 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 QDPRP09417 244 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 ZNF12P17014 697 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 ACHEP22303 614 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 EDNRAP25101 427 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 OTX1P32242 354 aaPredicted RBP6.02□□□□□ -1.45
VPS13A-201ENST00000355766 BMXP51813 675 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 ATP5J2P56134 94 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 CLDN15P56746 228 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 PCBD1P61457 104 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 RPS11P62280 158 aaKnown RBP eCLIP6.02□□□□□ -1.45
VPS13A-201ENST00000355766 LSM3P62310 102 aaKnown RBP6.02□□□□□ -1.45
VPS13A-201ENST00000355766 PPP3R1P63098 170 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 FMODQ06828 376 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 SCRN3Q0VDG4 424 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 FOXF2Q12947 444 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 EIF2B1Q14232 305 aaKnown RBP6.02□□□□□ -1.45
VPS13A-201ENST00000355766 MEP1BQ16820 701 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 CLEC12BQ2HXU8 276 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 ACSM3Q53FZ2 586 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 SPANXN2Q5MJ10 180 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 MZT2AQ6P582 158 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 METAP1DQ6UB28 335 aaPredicted RBP6.02□□□□□ -1.45
VPS13A-201ENST00000355766 LRRN1Q6UXK5 716 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 TMEM91Q6ZNR0 172 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 CHMP1BQ7LBR1 199 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 RFLNBQ8N5W9 214 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 SYT14Q8NB59 555 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 MINDY2Q8NBR6 621 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 GJC3Q8NFK1 279 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 OR6N1Q8NGY5 312 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 OR2AJ1Q8NGZ0 328 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 C11orf40Q8WZ69 217 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 ROBO4Q8WZ75 1007 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 C10orf35Q96D05 121 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 TRMT61AQ96FX7 289 aaKnown RBP6.02□□□□□ -1.45
VPS13A-201ENST00000355766 ZFP3Q96NJ6 502 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 FOXB1Q99853 325 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 CCDC32Q9BV29 185 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 HDHD5Q9BXW7 423 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 REG4Q9BYZ8 158 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 ULBP2Q9BZM5 246 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 HDHD2Q9H0R4 259 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 SLITRK2Q9H156 845 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 PIGMQ9H3S5 423 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 SP140LQ9H930 580 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 ELOVL3Q9HB03 270 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 MALT1Q9UDY8 824 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 NUFIP1Q9UHK0 495 aaKnown RBP6.02□□□□□ -1.45
VPS13A-201ENST00000355766 CAMK2AQ9UQM7 478 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 POLR1DQ9Y2S0 133 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 KLHDC2Q9Y2U9 406 aa6.02□□□□□ -1.45
VPS13A-201ENST00000355766 SIRT4Q9Y6E7 314 aaPredicted RBP6.02□□□□□ -1.45
VPS13A-201ENST00000355766 RAI1Q7Z5J4 1906 aaPredicted RBP6.01□□□□□ -1.45
VPS13A-201ENST00000355766 TRBV5-7A0A0A0MS05 114 aa6.01□□□□□ -1.45
VPS13A-201ENST00000355766 ISPDA4D126 451 aa6.01□□□□□ -1.45
VPS13A-201ENST00000355766 PRR32B1ATL7 298 aa6.01□□□□□ -1.45
VPS13A-201ENST00000355766 E9PI62 339 aa6.01□□□□□ -1.45
VPS13A-201ENST00000355766 LOC110117498-PIK3R3F6TDL0 507 aa6.01□□□□□ -1.45
VPS13A-201ENST00000355766 RAMP1O60894 148 aa6.01□□□□□ -1.45
VPS13A-201ENST00000355766 MRPL33O75394 65 aaKnown RBP6.01□□□□□ -1.45
VPS13A-201ENST00000355766 CDRT1O95170 752 aa6.01□□□□□ -1.45
VPS13A-201ENST00000355766 YES1P07947 543 aa6.01□□□□□ -1.45
VPS13A-201ENST00000355766 OR8G3PP0DMU2 310 aa6.01□□□□□ -1.45
VPS13A-201ENST00000355766 CCL1P22362 96 aa6.01□□□□□ -1.45
VPS13A-201ENST00000355766 NR4A1P22736 598 aa6.01□□□□□ -1.45
VPS13A-201ENST00000355766 CALRP27797 417 aaKnown RBP6.01□□□□□ -1.45
VPS13A-201ENST00000355766 LOXP28300 417 aaPredicted RBP6.01□□□□□ -1.45
VPS13A-201ENST00000355766 CCKARP32238 428 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms