RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 FOXQ1Q9C009 403 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 DUSP15Q9H1R2 295 aaPredicted RBP6.02□□□□□ -1.45
VPS39-202ENST00000348544 KCNJ16Q9NPI9 418 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 UBQLN4Q9NRR5 601 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 C19orf12Q9NSK7 152 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 DEC1Q9P2X7 70 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 CPAMD8Q8IZJ3 1885 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 A0A087X0M5 115 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 A0A1B0GX30 115 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 A0A1W2PP11 408 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 A0A1W2PP55 124 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 SEC14L6B5MCN3 397 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 PPM1AP35813 382 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 WASP42768 502 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 GPR3P46089 330 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 CAMLGP49069 296 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 EMP2P54851 167 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 RAB38P57729 211 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 ERVFRD-1P60508 538 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 SPCS3P61009 180 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 ELOBQ15370 118 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 ZNF674Q2M3X9 581 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 RPUSD3Q6P087 351 aaKnown RBP6.02□□□□□ -1.45
VPS39-202ENST00000348544 LINC00346Q8IVM7 164 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 ZNF101Q8IZC7 436 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 SLC22A24Q8N4F4 322 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 APCDD1LQ8NCL9 501 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 OR9A4Q8NGU2 314 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 GPBAR1Q8TDU6 330 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 METTL21AQ8WXB1 218 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 NEU1Q99519 415 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 S100A13Q99584 98 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 RTN4RQ9BZR6 473 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 TWSG1Q9GZX9 223 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 S1PR5Q9H228 398 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 DCAF16Q9NXF7 216 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 LSM5Q9Y4Y9 91 aaKnown RBP6.02□□□□□ -1.45
VPS39-202ENST00000348544 CLDN16Q9Y5I7 305 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 HEBP2Q9Y5Z4 205 aa6.02□□□□□ -1.45
VPS39-202ENST00000348544 FKTNO75072 461 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 SEC11BP0C7V7 166 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 HIST1H1DP16402 221 aaKnown RBP6.01□□□□□ -1.45
VPS39-202ENST00000348544 BCKDHBP21953 392 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 FCARP24071 287 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 GNALP38405 381 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 RPL27P61353 136 aaKnown RBP6.01□□□□□ -1.45
VPS39-202ENST00000348544 PKIAP61925 76 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 SLC35A1P78382 337 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 ERV3-1Q14264 604 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 KIR2DS3Q14952 304 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 SSX2Q16385 188 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 C14orf28Q4W4Y0 310 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 ZNF529Q6P280 563 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 GRASPQ7Z6J2 395 aaPredicted RBP6.01□□□□□ -1.45
VPS39-202ENST00000348544 WDFY1Q8IWB7 410 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 ZNF440Q8IYI8 595 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 RHBDD1Q8TEB9 315 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 RERGQ96A58 199 aaPredicted RBP6.01□□□□□ -1.45
VPS39-202ENST00000348544 NUDT16L1Q9BRJ7 211 aaKnown RBP6.01□□□□□ -1.45
VPS39-202ENST00000348544 C2orf88Q9BSF0 95 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 VSX1Q9NZR4 365 aaPredicted RBP6.01□□□□□ -1.45
VPS39-202ENST00000348544 LUZP4Q9P127 313 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 PISDQ9UG56 409 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 COA3Q9Y2R0 106 aaPredicted RBP6.01□□□□□ -1.45
VPS39-202ENST00000348544 TGIF2-C20orf24A0A0A6YYL0 155 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 TMEM269A0A1B0GVZ9 245 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 ZNF724A8MTY0 619 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 KNG1P01042 644 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 CLPSP04118 112 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 SLC2A1P11166 492 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 KLK2P20151 261 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 CHATP28329 748 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 APOBEC1P41238 236 aaKnown RBP6.01□□□□□ -1.45
VPS39-202ENST00000348544 CCL20P78556 96 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 CST6Q15828 149 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 HAGHQ16775 308 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.01□□□□□ -1.45
VPS39-202ENST00000348544 C1orf140Q5VVS0 124 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 LCN10Q6JVE6 187 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 BEND4Q6ZU67 534 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 DCXRQ7Z4W1 244 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 OR5H2Q8NGV7 314 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 MRPL24Q96A35 216 aaKnown RBP6.01□□□□□ -1.45
VPS39-202ENST00000348544 ELSPBP1Q96BH3 223 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 SLC22A18Q96BI1 424 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 SLC25A36Q96CQ1 311 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 RAB39BQ96DA2 213 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 MVB12AQ96EY5 273 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 ARHGAP5-AS1Q96IT6 56 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 SSX3Q99909 188 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 GINS3Q9BRX5 216 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 SOX7Q9BT81 388 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 APOOQ9BUR5 198 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 BANF2Q9H503 90 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 FBLN5Q9UBX5 448 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 TUBD1Q9UJT1 453 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 CA14Q9ULX7 337 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 RCL1Q9Y2P8 373 aaKnown RBP6.01□□□□□ -1.45
VPS39-202ENST00000348544 MEMO1Q9Y316 297 aa6.01□□□□□ -1.45
VPS39-202ENST00000348544 RFNGQ9Y644 331 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 62.3 ms