RNA–Protein interactions for RNA: snR47

snR47, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR47, Length 99 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR47	snR47	VPS16	Q03308	798 aa		0.59	□□□□□ -2.31
snR47	snR47	VPS36	Q06696	566 aa		0.59	□□□□□ -2.31
snR47	snR47	HRP1	Q99383	534 aa	Known RBP	0.59	□□□□□ -2.31
snR47	snR47	LAM4	P38800	1345 aa		0.59	□□□□□ -2.32
snR47	snR47	AIM17	P23180	465 aa	Known RBP	0.58	□□□□□ -2.32
snR47	snR47	CDC3	P32457	520 aa	Known RBP	0.58	□□□□□ -2.32
snR47	snR47	YHR112C	P38716	378 aa		0.58	□□□□□ -2.32
snR47	snR47	CRP1	P38845	465 aa	Known RBP	0.58	□□□□□ -2.32
snR47	snR47	YIL024C	P40543	189 aa		0.58	□□□□□ -2.32
snR47	snR47	CCM1	P48237	864 aa	Predicted RBP	0.58	□□□□□ -2.32
snR47	snR47	SPO20	Q04359	397 aa		0.58	□□□□□ -2.32
snR47	snR47	ENT2	Q05785	613 aa		0.58	□□□□□ -2.32
snR47	snR47	THI21	Q08975	551 aa		0.58	□□□□□ -2.32
snR47	snR47	RPS9B	P05755	195 aa	Known RBP	0.57	□□□□□ -2.32
snR47	snR47	URE2	P23202	354 aa	Known RBP	0.57	□□□□□ -2.32
snR47	snR47	MRPL9	P31334	269 aa		0.57	□□□□□ -2.32
snR47	snR47	CYS3	P31373	394 aa	Known RBP	0.57	□□□□□ -2.32
snR47	snR47	APL2	P36000	726 aa	Predicted RBP	0.57	□□□□□ -2.32
snR47	snR47	TRZ1	P36159	838 aa	Predicted RBP	0.57	□□□□□ -2.32
snR47	snR47	YHR097C	P38809	366 aa	Known RBP	0.57	□□□□□ -2.32
snR47	snR47	MTG2	P38860	518 aa		0.57	□□□□□ -2.32
snR47	snR47	MBP1	P39678	833 aa		0.57	□□□□□ -2.32
snR47	snR47	YEL068C	P39977	110 aa		0.57	□□□□□ -2.32
snR47	snR47	MDV1	P47025	714 aa		0.57	□□□□□ -2.32
snR47	snR47	ESC2	Q06340	456 aa		0.57	□□□□□ -2.32
snR47	snR47	BSP1	Q06604	576 aa		0.57	□□□□□ -2.32
snR47	snR47	YDL086W	Q07505	273 aa		0.57	□□□□□ -2.32
snR47	snR47	YOR022C	Q12204	715 aa		0.57	□□□□□ -2.32
snR47	snR47	YLR111W	Q12528	110 aa		0.57	□□□□□ -2.32
snR47	snR47	ADE8	P04161	214 aa		0.56	□□□□□ -2.32
snR47	snR47	AQY1	P0CD91	305 aa		0.56	□□□□□ -2.32
snR47	snR47	YMR085W	P0CF18	432 aa		0.56	□□□□□ -2.32
snR47	snR47	ERG6	P25087	383 aa	Known RBP	0.56	□□□□□ -2.32
snR47	snR47	HES1	P35843	434 aa		0.56	□□□□□ -2.32
snR47	snR47	MET10	P39692	1035 aa		0.56	□□□□□ -2.32
snR47	snR47	GET2	P40056	285 aa		0.56	□□□□□ -2.32
snR47	snR47	SIM1	P40472	476 aa		0.56	□□□□□ -2.32
snR47	snR47	OPT1	P40897	799 aa		0.56	□□□□□ -2.32
snR47	snR47	ROK1	P45818	564 aa	Predicted RBP	0.56	□□□□□ -2.32
snR47	snR47	BOP3	P53958	396 aa		0.56	□□□□□ -2.32
snR47	snR47	RSC3	Q06639	885 aa		0.56	□□□□□ -2.32
snR47	snR47	RKI1	Q12189	258 aa		0.56	□□□□□ -2.32
snR47	snR47	HAT1	Q12341	374 aa		0.56	□□□□□ -2.32
snR47	snR47	RPL7A	P05737	244 aa	Known RBP	0.55	□□□□□ -2.32
snR47	snR47	RAD18	P10862	487 aa		0.55	□□□□□ -2.32
snR47	snR47	CDC34	P14682	295 aa		0.55	□□□□□ -2.32
snR47	snR47	ADE2	P21264	571 aa	Known RBP	0.55	□□□□□ -2.32
snR47	snR47	PRP28	P23394	588 aa		0.55	□□□□□ -2.32
snR47	snR47	PPZ1	P26570	692 aa		0.55	□□□□□ -2.32
snR47	snR47	GSY2	P27472	705 aa		0.55	□□□□□ -2.32
snR47	snR47	PPH3	P32345	308 aa		0.55	□□□□□ -2.32
snR47	snR47	RPC34	P32910	317 aa		0.55	□□□□□ -2.32
snR47	snR47	APL3	P38065	1025 aa		0.55	□□□□□ -2.32
snR47	snR47	ERT1	P38140	529 aa		0.55	□□□□□ -2.32
snR47	snR47	TOK1	P40310	691 aa		0.55	□□□□□ -2.32
snR47	snR47	MKT1	P40850	830 aa	Known RBP	0.55	□□□□□ -2.32
snR47	snR47	PRP31	P49704	494 aa	Predicted RBP	0.55	□□□□□ -2.32
snR47	snR47	COP1	P53622	1201 aa	Known RBP	0.55	□□□□□ -2.32
snR47	snR47	SNF12	P53628	566 aa		0.55	□□□□□ -2.32
snR47	snR47	ARG5,6	Q01217	863 aa		0.55	□□□□□ -2.32
snR47	snR47	NGL2	Q03264	515 aa	Known RBP	0.55	□□□□□ -2.32
snR47	snR47	TLG2	Q08144	397 aa		0.55	□□□□□ -2.32
snR47	snR47	MSC6	Q08818	692 aa	Known RBP	0.55	□□□□□ -2.32
snR47	snR47	RPL7B	Q12213	244 aa	Known RBP	0.55	□□□□□ -2.32
snR47	snR47	UBX3	Q12229	455 aa		0.55	□□□□□ -2.32
snR47	snR47	HEM1	P09950	548 aa	Predicted RBP	0.54	□□□□□ -2.32
snR47	snR47	TOP3	P13099	656 aa		0.54	□□□□□ -2.32
snR47	snR47	PEX1	P24004	1043 aa		0.54	□□□□□ -2.32
snR47	snR47	LDB16	P25587	256 aa		0.54	□□□□□ -2.32
snR47	snR47	SEC6	P32844	805 aa		0.54	□□□□□ -2.32
snR47	snR47	YRO2	P38079	344 aa		0.54	□□□□□ -2.32
snR47	snR47	CTP1	P38152	299 aa		0.54	□□□□□ -2.32
snR47	snR47	GND1	P38720	489 aa	Known RBP	0.54	□□□□□ -2.32
snR47	snR47	ATG36	P46983	293 aa		0.54	□□□□□ -2.32
snR47	snR47	MTR3	P48240	250 aa	Predicted RBP	0.54	□□□□□ -2.32
snR47	snR47	NOG2	P53742	486 aa	Known RBP	0.54	□□□□□ -2.32
snR47	snR47	IGO1	P53897	168 aa		0.54	□□□□□ -2.32
snR47	snR47	HMO1	Q03973	246 aa	Known RBP	0.54	□□□□□ -2.32
snR47	snR47	YDR306C	Q06640	478 aa		0.54	□□□□□ -2.32
snR47	snR47	MCM21	Q06675	368 aa		0.54	□□□□□ -2.32
snR47	snR47	IZH3	Q07959	543 aa		0.54	□□□□□ -2.32
snR47	snR47	DSE3	Q08729	430 aa		0.54	□□□□□ -2.32
snR47	snR47	SRD1	P09007	221 aa		0.53	□□□□□ -2.32
snR47	snR47	BCS1	P32839	456 aa		0.53	□□□□□ -2.32
snR47	snR47	HSL7	P38274	827 aa		0.53	□□□□□ -2.32
snR47	snR47	BIT2	P38346	545 aa		0.53	□□□□□ -2.32
snR47	snR47	VRG4	P40107	337 aa		0.53	□□□□□ -2.32
snR47	snR47	YIR016W	P40572	265 aa		0.53	□□□□□ -2.32
snR47	snR47	YSH1	Q06224	779 aa	Predicted RBP	0.53	□□□□□ -2.32
snR47	snR47	ESF1	Q06344	628 aa	Known RBP	0.53	□□□□□ -2.32
snR47	snR47	PUF2	Q12221	1075 aa	Known RBP RIP-Chip data	0.53	□□□□□ -2.32	not detected
snR47	snR47	AIM44	Q99299	758 aa		0.53	□□□□□ -2.32
snR47	snR47	PRC1	P00729	532 aa		0.52	□□□□□ -2.33
snR47	snR47	SBA1	P28707	216 aa	Known RBP	0.52	□□□□□ -2.33
snR47	snR47	ABD1	P32783	436 aa	Predicted RBP	0.52	□□□□□ -2.33
snR47	snR47	REC104	P33323	182 aa		0.52	□□□□□ -2.33
snR47	snR47	KHA1	P40309	873 aa		0.52	□□□□□ -2.33
snR47	snR47	MPS3	P47069	682 aa		0.52	□□□□□ -2.33
snR47	snR47	YBP2	P53169	641 aa		0.52	□□□□□ -2.33
snR47	snR47	LCD1	Q04377	747 aa		0.52	□□□□□ -2.33

Retrieved 100 of 5,963 RNA–protein pairs in 75.2 ms