RNA–Protein interactions for RNA: YJR093C

FIP1, Transcript of Subunit of cleavage polyadenylation factor (CPF), yeast

Gene FIP1, Length 984 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
FIP1	YJR093C	MRC1	P25588	1096 aa		4.91	□□□□□ -1.62
FIP1	YJR093C	HIS7	P33734	552 aa	Known RBP	4.91	□□□□□ -1.62
FIP1	YJR093C	YKR018C	P36114	725 aa		4.91	□□□□□ -1.62
FIP1	YJR093C	ENP1	P38333	483 aa	Known RBP	4.91	□□□□□ -1.62
FIP1	YJR093C	OAF1	P39720	1047 aa	Predicted RBP	4.91	□□□□□ -1.62
FIP1	YJR093C	MTL1	P53214	551 aa		4.91	□□□□□ -1.62
FIP1	YJR093C	ARG5,6	Q01217	863 aa		4.91	□□□□□ -1.62
FIP1	YJR093C	GAD1	Q04792	585 aa		4.91	□□□□□ -1.62
FIP1	YJR093C	MTH1	P35198	433 aa		4.9	□□□□□ -1.63
FIP1	YJR093C	LYS9	P38999	446 aa		4.9	□□□□□ -1.63
FIP1	YJR093C	PCL10	P53124	433 aa		4.9	□□□□□ -1.63
FIP1	YJR093C	COG6	P53959	839 aa		4.9	□□□□□ -1.63
FIP1	YJR093C	RGC1	Q06108	1083 aa	Known RBP	4.9	□□□□□ -1.63
FIP1	YJR093C	YTM1	Q12024	460 aa	Predicted RBP	4.9	□□□□□ -1.63
FIP1	YJR093C	DAL3	P32459	195 aa		4.89	□□□□□ -1.63
FIP1	YJR093C	PEX2	P32800	271 aa		4.89	□□□□□ -1.63
FIP1	YJR093C	YBR071W	P38243	211 aa		4.89	□□□□□ -1.63
FIP1	YJR093C	TDA3	P38758	523 aa		4.89	□□□□□ -1.63
FIP1	YJR093C	BCD1	P38772	366 aa		4.89	□□□□□ -1.63
FIP1	YJR093C	ATG36	P46983	293 aa		4.89	□□□□□ -1.63
FIP1	YJR093C	YGR153W	P48238	217 aa		4.89	□□□□□ -1.63
FIP1	YJR093C	ACF2	Q12168	779 aa		4.89	□□□□□ -1.63
FIP1	YJR093C	APL2	P36000	726 aa	Predicted RBP	4.88	□□□□□ -1.63
FIP1	YJR093C	YNL195C	P40168	261 aa		4.88	□□□□□ -1.63
FIP1	YJR093C	BAP3	P41815	604 aa		4.88	□□□□□ -1.63
FIP1	YJR093C	GZF3	P42944	551 aa	Known RBP	4.88	□□□□□ -1.63
FIP1	YJR093C	BRE5	P53741	515 aa	Known RBP	4.88	□□□□□ -1.63
FIP1	YJR093C	ECM9	Q02202	377 aa		4.88	□□□□□ -1.63
FIP1	YJR093C	DCS2	Q12123	353 aa		4.88	□□□□□ -1.63
FIP1	YJR093C	HRP1	Q99383	534 aa	Known RBP	4.88	□□□□□ -1.63
FIP1	YJR093C	MDM10	P18409	493 aa		4.87	□□□□□ -1.63
FIP1	YJR093C	TRZ1	P36159	838 aa	Predicted RBP	4.87	□□□□□ -1.63
FIP1	YJR093C	GRX7	P38068	203 aa		4.87	□□□□□ -1.63
FIP1	YJR093C	ECM1	P39715	212 aa		4.87	□□□□□ -1.63
FIP1	YJR093C	RET2	P43621	546 aa		4.87	□□□□□ -1.63
FIP1	YJR093C	UBC11	P52492	156 aa		4.87	□□□□□ -1.63
FIP1	YJR093C	PEX8	P53248	589 aa		4.87	□□□□□ -1.63
FIP1	YJR093C	GND2	P53319	492 aa		4.87	□□□□□ -1.63
FIP1	YJR093C	TRE2	Q08693	809 aa		4.87	□□□□□ -1.63
FIP1	YJR093C	ATG11	Q12527	1178 aa		4.87	□□□□□ -1.63
FIP1	YJR093C	RPS21B	Q3E754	87 aa	Known RBP	4.87	□□□□□ -1.63
FIP1	YJR093C	TFC4	P33339	1025 aa		4.86	□□□□□ -1.63
FIP1	YJR093C	PCL5	P38794	229 aa		4.86	□□□□□ -1.63
FIP1	YJR093C	FMO1	P38866	432 aa		4.86	□□□□□ -1.63
FIP1	YJR093C	HXT6	P39003	570 aa	Known RBP	4.86	□□□□□ -1.63
FIP1	YJR093C	HXT7	P39004	570 aa		4.86	□□□□□ -1.63
FIP1	YJR093C	CCT5	P40413	562 aa	Known RBP	4.86	□□□□□ -1.63
FIP1	YJR093C	MNN11	P46985	422 aa	Known RBP	4.86	□□□□□ -1.63
FIP1	YJR093C	CTK1	Q03957	528 aa	Known RBP	4.86	□□□□□ -1.63
FIP1	YJR093C	OMS1	Q06668	471 aa		4.86	□□□□□ -1.63
FIP1	YJR093C	YOL057W	Q08225	711 aa		4.86	□□□□□ -1.63
FIP1	YJR093C	RPS21A	P0C0V8	87 aa	Known RBP	4.85	□□□□□ -1.63
FIP1	YJR093C	RNR1	P21524	888 aa	Known RBP	4.85	□□□□□ -1.63
FIP1	YJR093C	HIR1	P32479	840 aa		4.85	□□□□□ -1.63
FIP1	YJR093C	GET2	P40056	285 aa		4.85	□□□□□ -1.63
FIP1	YJR093C	SET2	P46995	733 aa	Known RBP	4.85	□□□□□ -1.63
FIP1	YJR093C	COX18	P53239	316 aa		4.85	□□□□□ -1.63
FIP1	YJR093C	MCM21	Q06675	368 aa		4.85	□□□□□ -1.63
FIP1	YJR093C	MVD1	P32377	396 aa	Known RBP	4.84	□□□□□ -1.63
FIP1	YJR093C	PLC1	P32383	869 aa		4.84	□□□□□ -1.63
FIP1	YJR093C	AKL1	P38080	1108 aa	Known RBP	4.84	□□□□□ -1.63
FIP1	YJR093C	YHL017W	P38745	532 aa		4.84	□□□□□ -1.63
FIP1	YJR093C	SSZ1	P38788	538 aa	Known RBP	4.84	□□□□□ -1.63
FIP1	YJR093C	SFB3	P38810	929 aa		4.84	□□□□□ -1.63
FIP1	YJR093C	YHR202W	P38887	602 aa		4.84	□□□□□ -1.63
FIP1	YJR093C	NUG1	P40010	520 aa	Known RBP	4.84	□□□□□ -1.63
FIP1	YJR093C	GPP2	P40106	250 aa	Known RBP	4.84	□□□□□ -1.63
FIP1	YJR093C	DUG1	P43616	481 aa	Known RBP	4.84	□□□□□ -1.63
FIP1	YJR093C	NIT2	P47016	307 aa		4.84	□□□□□ -1.63
FIP1	YJR093C	PEX14	P53112	341 aa		4.84	□□□□□ -1.63
FIP1	YJR093C	REC102	Q02721	264 aa		4.84	□□□□□ -1.63
FIP1	YJR093C	SND1	Q04007	877 aa		4.84	□□□□□ -1.63
FIP1	YJR093C	YHM2	Q04013	314 aa		4.84	□□□□□ -1.63
FIP1	YJR093C	ISA1	Q07821	250 aa	Predicted RBP	4.84	□□□□□ -1.63
FIP1	YJR093C	ECM3	Q99252	613 aa		4.84	□□□□□ -1.63
FIP1	YJR093C	SER1	P33330	395 aa	Known RBP	4.83	□□□□□ -1.64
FIP1	YJR093C	APT2	P36973	181 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	APN2	P38207	520 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	FAT1	P38225	669 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	CBR1	P38626	284 aa	Known RBP	4.83	□□□□□ -1.64
FIP1	YJR093C	HRB1	P38922	454 aa	Known RBP RIP-Chip data	4.83	□□□□□ -1.64	not detected
FIP1	YJR093C	CCT3	P39077	534 aa	Known RBP	4.83	□□□□□ -1.64
FIP1	YJR093C	NUP60	P39705	539 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	FMP52	P40008	231 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	GID8	P40208	455 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	DAS1	P47005	663 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	YJR039W	P47107	1121 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	PAN2	P53010	1115 aa	Predicted RBP	4.83	□□□□□ -1.64
FIP1	YJR093C	YNL034W	P53963	612 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	YNL018C	P53976	612 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	TGL2	P54857	326 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	AFT2	Q08957	416 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	SUT2	Q12286	268 aa		4.83	□□□□□ -1.64
FIP1	YJR093C	PYC1	P11154	1178 aa	Known RBP	4.82	□□□□□ -1.64
FIP1	YJR093C	AEP2	P22136	580 aa		4.82	□□□□□ -1.64
FIP1	YJR093C	OAF3	P36023	863 aa		4.82	□□□□□ -1.64
FIP1	YJR093C	DID4	P36108	232 aa		4.82	□□□□□ -1.64
FIP1	YJR093C	REV7	P38927	245 aa		4.82	□□□□□ -1.64
FIP1	YJR093C	NOP9	P47077	666 aa	Known RBP	4.82	□□□□□ -1.64
FIP1	YJR093C	GPD1	Q00055	391 aa	Known RBP	4.82	□□□□□ -1.64

Retrieved 100 of 5,963 RNA–protein pairs in 31.8 ms