RNA–Protein interactions for RNA: YDR393W

SHE9, Transcript of Protein required for normal mitochondrial morphology, yeast

Gene SHE9, Length 1,371 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SHE9	YDR393W	REC102	Q02721	264 aa		4.91	□□□□□ -1.62
SHE9	YDR393W	PEX1	P24004	1043 aa		4.91	□□□□□ -1.62
SHE9	YDR393W	GID8	P40208	455 aa		4.91	□□□□□ -1.62
SHE9	YDR393W	KCC4	P25389	1037 aa		4.9	□□□□□ -1.63
SHE9	YDR393W	GDH3	P39708	457 aa		4.9	□□□□□ -1.63
SHE9	YDR393W	LTP1	P40347	161 aa		4.9	□□□□□ -1.63
SHE9	YDR393W	NOP9	P47077	666 aa	Known RBP	4.9	□□□□□ -1.63
SHE9	YDR393W	MAL11	P53048	616 aa		4.9	□□□□□ -1.63
SHE9	YDR393W	NPY1	P53164	384 aa		4.9	□□□□□ -1.63
SHE9	YDR393W	SLK19	Q08581	821 aa	Known RBP	4.9	□□□□□ -1.63
SHE9	YDR393W	STE12	P13574	688 aa		4.89	□□□□□ -1.63
SHE9	YDR393W	YKR051W	P36142	418 aa		4.89	□□□□□ -1.63
SHE9	YDR393W	YMC2	P38087	329 aa		4.89	□□□□□ -1.63
SHE9	YDR393W	MIT1	P40002	666 aa		4.89	□□□□□ -1.63
SHE9	YDR393W	YGR151C	P53287	111 aa		4.89	□□□□□ -1.63
SHE9	YDR393W	THI22	Q06490	572 aa		4.89	□□□□□ -1.63
SHE9	YDR393W	PGK1	P00560	416 aa	Known RBP	4.88	□□□□□ -1.63
SHE9	YDR393W	RPA135	P22138	1203 aa	Known RBP	4.88	□□□□□ -1.63
SHE9	YDR393W	MIH1	P23748	554 aa		4.88	□□□□□ -1.63
SHE9	YDR393W	PTP1	P25044	335 aa		4.88	□□□□□ -1.63
SHE9	YDR393W	ECM3	Q99252	613 aa		4.88	□□□□□ -1.63
SHE9	YDR393W	BCS1	P32839	456 aa		4.87	□□□□□ -1.63
SHE9	YDR393W	BIT2	P38346	545 aa		4.87	□□□□□ -1.63
SHE9	YDR393W	SPC98	P53540	846 aa		4.87	□□□□□ -1.63
SHE9	YDR393W	FMP30	Q02883	468 aa		4.87	□□□□□ -1.63
SHE9	YDR393W	PHO5	P00635	467 aa		4.86	□□□□□ -1.63
SHE9	YDR393W	STO1	P34160	861 aa	Known RBP	4.86	□□□□□ -1.63
SHE9	YDR393W	KSP1	P38691	1029 aa	Known RBP	4.86	□□□□□ -1.63
SHE9	YDR393W	RPN10	P38886	268 aa	Known RBP	4.86	□□□□□ -1.63
SHE9	YDR393W	XBP1	P40489	647 aa		4.86	□□□□□ -1.63
SHE9	YDR393W	NET1	P47035	1189 aa		4.86	□□□□□ -1.63
SHE9	YDR393W	SNP1	Q00916	300 aa	Predicted RBP	4.86	□□□□□ -1.63
SHE9	YDR393W	RPN7	Q06103	429 aa	Known RBP	4.86	□□□□□ -1.63
SHE9	YDR393W	BMS1	Q08965	1183 aa	Known RBP	4.86	□□□□□ -1.63
SHE9	YDR393W	RGT2	Q12300	763 aa		4.86	□□□□□ -1.63
SHE9	YDR393W	RAD18	P10862	487 aa		4.85	□□□□□ -1.63
SHE9	YDR393W	SAT4	P25333	603 aa	Known RBP	4.85	□□□□□ -1.63
SHE9	YDR393W	YMC1	P32331	307 aa		4.85	□□□□□ -1.63
SHE9	YDR393W	SEC6	P32844	805 aa		4.85	□□□□□ -1.63
SHE9	YDR393W	YKR018C	P36114	725 aa		4.85	□□□□□ -1.63
SHE9	YDR393W	YNL195C	P40168	261 aa		4.85	□□□□□ -1.63
SHE9	YDR393W	RSC8	P43609	557 aa	Known RBP	4.85	□□□□□ -1.63
SHE9	YDR393W	SCS3	P53012	380 aa		4.85	□□□□□ -1.63
SHE9	YDR393W	PCL10	P53124	433 aa		4.85	□□□□□ -1.63
SHE9	YDR393W	COX18	P53239	316 aa		4.85	□□□□□ -1.63
SHE9	YDR393W	ARP4	P80428	489 aa		4.85	□□□□□ -1.63
SHE9	YDR393W	LEE1	Q02799	301 aa	Known RBP	4.85	□□□□□ -1.63
SHE9	YDR393W	ABF1	P14164	731 aa		4.84	□□□□□ -1.63
SHE9	YDR393W	NUP1	P20676	1076 aa		4.84	□□□□□ -1.63
SHE9	YDR393W	PRP28	P23394	588 aa		4.84	□□□□□ -1.63
SHE9	YDR393W	YHR097C	P38809	366 aa	Known RBP	4.84	□□□□□ -1.63
SHE9	YDR393W	PMC1	P38929	1173 aa	Predicted RBP	4.84	□□□□□ -1.63
SHE9	YDR393W	PIG2	P40187	538 aa		4.84	□□□□□ -1.63
SHE9	YDR393W	CAF16	P43569	289 aa		4.84	□□□□□ -1.63
SHE9	YDR393W	HFD1	Q04458	532 aa		4.84	□□□□□ -1.63
SHE9	YDR393W	YDL086W	Q07505	273 aa		4.84	□□□□□ -1.63
SHE9	YDR393W	CHS5	Q12114	671 aa	Known RBP	4.84	□□□□□ -1.63
SHE9	YDR393W	CDC9	P04819	755 aa		4.83	□□□□□ -1.64
SHE9	YDR393W	ADE5,7	P07244	802 aa	Known RBP	4.83	□□□□□ -1.64
SHE9	YDR393W	ERR1	P0CX10	437 aa		4.83	□□□□□ -1.64
SHE9	YDR393W	ERR2	P0CX11	437 aa		4.83	□□□□□ -1.64
SHE9	YDR393W	UGP1	P32861	499 aa	Known RBP	4.83	□□□□□ -1.64
SHE9	YDR393W	ASN1	P49089	572 aa	Known RBP	4.83	□□□□□ -1.64
SHE9	YDR393W	NMA2	P53204	395 aa		4.82	□□□□□ -1.64
SHE9	YDR393W	DIA2	Q08496	732 aa	Predicted RBP	4.82	□□□□□ -1.64
SHE9	YDR393W	CDC53	Q12018	815 aa	Known RBP	4.82	□□□□□ -1.64
SHE9	YDR393W	LAM4	P38800	1345 aa		4.82	□□□□□ -1.64
SHE9	YDR393W	HSL7	P38274	827 aa		4.81	□□□□□ -1.64
SHE9	YDR393W	TAX4	P47030	604 aa		4.81	□□□□□ -1.64
SHE9	YDR393W	MPS3	P47069	682 aa		4.81	□□□□□ -1.64
SHE9	YDR393W	NSE3	Q05541	303 aa		4.81	□□□□□ -1.64
SHE9	YDR393W	MDM12	Q92328	271 aa		4.81	□□□□□ -1.64
SHE9	YDR393W	APN1	P22936	367 aa		4.8	□□□□□ -1.64
SHE9	YDR393W	MBR1	P23493	339 aa		4.8	□□□□□ -1.64
SHE9	YDR393W	FEN2	P25621	512 aa	Known RBP	4.8	□□□□□ -1.64
SHE9	YDR393W	CTP1	P38152	299 aa		4.8	□□□□□ -1.64
SHE9	YDR393W	NHX1	Q04121	633 aa		4.8	□□□□□ -1.64
SHE9	YDR393W	ULA1	Q12059	462 aa		4.8	□□□□□ -1.64
SHE9	YDR393W	SET2	P46995	733 aa	Known RBP	4.79	□□□□□ -1.64
SHE9	YDR393W	RFX1	P48743	811 aa		4.79	□□□□□ -1.64
SHE9	YDR393W	YUR1	P26725	428 aa		4.78	□□□□□ -1.64
SHE9	YDR393W	HOG1	P32485	435 aa		4.78	□□□□□ -1.64
SHE9	YDR393W	APN2	P38207	520 aa		4.78	□□□□□ -1.64
SHE9	YDR393W	KHA1	P40309	873 aa		4.78	□□□□□ -1.64
SHE9	YDR393W	PMT6	P42934	759 aa		4.78	□□□□□ -1.64
SHE9	YDR393W	BRE5	P53741	515 aa	Known RBP	4.78	□□□□□ -1.64
SHE9	YDR393W	MPS1	P54199	764 aa		4.78	□□□□□ -1.64
SHE9	YDR393W	YSH1	Q06224	779 aa	Predicted RBP	4.78	□□□□□ -1.64
SHE9	YDR393W	CIR2	Q08822	631 aa		4.78	□□□□□ -1.64
SHE9	YDR393W	RKI1	Q12189	258 aa		4.78	□□□□□ -1.64
SHE9	YDR393W	STI1	P15705	589 aa	Known RBP RIP-Chip data	4.78	□□□□□ -1.64	not detected
SHE9	YDR393W	MSS1	P32559	526 aa	Predicted RBP	4.78	□□□□□ -1.64
SHE9	YDR393W	BPL1	P48445	690 aa	Predicted RBP	4.78	□□□□□ -1.64
SHE9	YDR393W	TPK2	P06245	380 aa		4.77	□□□□□ -1.65
SHE9	YDR393W	MEF1	P25039	761 aa		4.77	□□□□□ -1.65
SHE9	YDR393W	CHZ1	P40019	153 aa	Predicted RBP	4.77	□□□□□ -1.65
SHE9	YDR393W	CCT5	P40413	562 aa	Known RBP	4.77	□□□□□ -1.65
SHE9	YDR393W	MDM20	Q12387	796 aa	Known RBP	4.77	□□□□□ -1.65
SHE9	YDR393W	VBA3	P25594	458 aa		4.76	□□□□□ -1.65
SHE9	YDR393W	HOT13	P36078	116 aa		4.76	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 17.3 ms