RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 EXOC6Q8TAG9 804 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 PCP4L1A6NKN8 68 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 PPFIA2O75334 1257 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 FAM200BP0CF97 657 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 CCDC93Q567U6 631 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 NDUFAF2Q8N183 169 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 ATP11CQ8NB49 1132 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 PLVAPQ9BX97 442 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 BICC1Q9H694 974 aaKnown RBP4.07□□□□□ -1.76
SCN1A-221ENST00000641996 XAB2Q9HCS7 855 aaKnown RBP4.07□□□□□ -1.76
SCN1A-221ENST00000641996 MRPL40Q9NQ50 206 aaKnown RBP4.07□□□□□ -1.76
SCN1A-221ENST00000641996 SOX11P35716 441 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 TPM4P67936 248 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 POLA2Q14181 598 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 MAP9Q49MG5 647 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 CPXCR1Q8N123 301 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 SPACA7Q96KW9 195 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 SH3GL1Q99961 368 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 TMOD2Q9NZR1 351 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 ZBTB21Q9ULJ3 1066 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 GABPB1Q06547 395 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-221ENST00000641996 TMED1Q13445 227 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 PARD3BQ8TEW8 1205 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 ABTB1Q969K4 478 aaPredicted RBP4.07□□□□□ -1.76
SCN1A-221ENST00000641996 PHACTR1Q9C0D0 580 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 DCAF1Q9Y4B6 1507 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 ZNF318Q5VUA4 2279 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 ERLIN1O75477 346 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 IGHDP01880 384 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 SPATA5Q8NB90 893 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 CCDC110Q8TBZ0 833 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 ATP6V0A1Q93050 837 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 KIF9Q9HAQ2 790 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 CNPY2Q9Y2B0 182 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 SENP3-EIF4A1A0A087X0R7 540 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 IFT88Q13099 833 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 TRIM14Q14142 442 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 C1orf228Q6PIY5 440 aa4.07□□□□□ -1.76
SCN1A-221ENST00000641996 XPO4Q9C0E2 1151 aaKnown RBP4.07□□□□□ -1.76
SCN1A-221ENST00000641996 ZBED6P86452 979 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 KRT72Q14CN4 511 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 CFAP70Q5T0N1 1121 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 BARD1Q99728 777 aaKnown RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 RAD54L2Q9Y4B4 1467 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 PDHA1P08559 390 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 PDE4DQ08499 809 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 DACT3Q96B18 629 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 PALMDQ9NP74 551 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 SLC4A1P02730 911 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 RBP3P10745 1247 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 TMEM57Q8N5G2 664 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 SERBP1Q8NC51 408 aaKnown RBP eCLIP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 ZBTB10Q96DT7 871 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 LZTS2Q9BRK4 669 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 COBLO75128 1261 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 TPD52P55327 224 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 LAMB3Q13751 1172 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 CCDC178Q5BJE1 867 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 FERMT3Q86UX7 667 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 LUZP1Q86V48 1076 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 ERC1Q8IUD2 1116 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 DZIP1LQ8IYY4 767 aaKnown RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 SAMD14Q8IZD0 417 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 ACBD3Q9H3P7 528 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 TSPY26PQ9H489 355 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 IFIT2P09913 472 aaKnown RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 RRP1P56182 461 aaKnown RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 AGR2O95994 175 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 VPS41P49754 854 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 DAAM2Q86T65 1068 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 CCAR2Q8N163 923 aaKnown RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 GDPD2Q9HCC8 539 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 MTUS1Q9ULD2 1270 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 USH1CQ9Y6N9 552 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 MCCD1P59942 119 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 ZC3H6P61129 1189 aaKnown RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 CCDC57Q2TAC2 916 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 KBTBD12Q3ZCT8 623 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 BHMTQ93088 406 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 KCTD5Q9NXV2 234 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 RPAP2Q8IXW5 612 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 TMEM63CQ9P1W3 806 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 SSX2IPQ9Y2D8 614 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 NEMFO60524 1076 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 NFX1Q12986 1120 aaKnown RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 SPATS2Q86XZ4 545 aaKnown RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 RAB11FIP4Q86YS3 637 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 SNRNP27Q8WVK2 155 aaKnown RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 ABCF3Q9NUQ8 709 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 FBXO2Q9UK22 296 aaPredicted RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 SNUPNO95149 360 aaKnown RBP4.06□□□□□ -1.76
SCN1A-221ENST00000641996 MMEP08473 750 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 RLBP1P12271 317 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 SDE2Q6IQ49 451 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 SYCP3Q8IZU3 236 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 B4GALNT2Q8NHY0 566 aa4.06□□□□□ -1.76
SCN1A-221ENST00000641996 GOLGA2Q08379 1002 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 PAIP2BQ9ULR5 123 aaKnown RBP4.05□□□□□ -1.76
SCN1A-221ENST00000641996 CHD4Q14839 1912 aa4.05□□□□□ -1.76
SCN1A-221ENST00000641996 PIK3CAP42336 1068 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms