RNA–Protein interactions for RNA: ENST00000636355.1

CLN3-248, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 975 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-248ENST00000636355 DDR1Q08345 913 aa12.76□□□□□ -0.37
CLN3-248ENST00000636355 ZSCAN25Q6NSZ9 544 aa12.76□□□□□ -0.37
CLN3-248ENST00000636355 C3orf67Q6ZVT6 689 aa12.76□□□□□ -0.37
CLN3-248ENST00000636355 DEFB132Q7Z7B7 95 aa12.76□□□□□ -0.37
CLN3-248ENST00000636355 DNAJC2Q99543 621 aaKnown RBP12.76□□□□□ -0.37
CLN3-248ENST00000636355 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.76□□□□□ -0.37
CLN3-248ENST00000636355 STK32BQ9NY57 414 aa12.76□□□□□ -0.37
CLN3-248ENST00000636355 CCDC171Q6TFL3 1326 aa12.76□□□□□ -0.37
CLN3-248ENST00000636355 MAP4K4O95819 1239 aaPredicted RBP12.75□□□□□ -0.37
CLN3-248ENST00000636355 YY1P25490 414 aa12.75□□□□□ -0.37
CLN3-248ENST00000636355 ADORA1P30542 326 aa12.75□□□□□ -0.37
CLN3-248ENST00000636355 SLC15A2Q16348 729 aa12.75□□□□□ -0.37
CLN3-248ENST00000636355 CCDC88AQ3V6T2 1871 aa12.75□□□□□ -0.37
CLN3-248ENST00000636355 CCDC102BQ68D86 513 aa12.75□□□□□ -0.37
CLN3-248ENST00000636355 CWC27Q6UX04 472 aaKnown RBP12.75□□□□□ -0.37
CLN3-248ENST00000636355 SMIM5Q71RC9 77 aa12.75□□□□□ -0.37
CLN3-248ENST00000636355 COL23A1Q86Y22 540 aaPredicted RBP12.75□□□□□ -0.37
CLN3-248ENST00000636355 RPGRQ92834 1020 aaKnown RBP12.75□□□□□ -0.37
CLN3-248ENST00000636355 CRAMP1Q96RY5 1269 aa12.75□□□□□ -0.37
CLN3-248ENST00000636355 KIF2CQ99661 725 aa12.75□□□□□ -0.37
CLN3-248ENST00000636355 LSG1Q9H089 658 aaKnown RBP12.75□□□□□ -0.37
CLN3-248ENST00000636355 HELLSQ9NRZ9 838 aa12.75□□□□□ -0.37
CLN3-248ENST00000636355 MYO5AQ9Y4I1 1855 aaKnown RBP12.74□□□□□ -0.37
CLN3-248ENST00000636355 PSDA5PKW4 1024 aaPredicted RBP12.74□□□□□ -0.37
CLN3-248ENST00000636355 GOLIM4O00461 696 aa12.74□□□□□ -0.37
CLN3-248ENST00000636355 HSPA4P34932 840 aa12.74□□□□□ -0.37
CLN3-248ENST00000636355 NMIQ13287 307 aaPredicted RBP12.74□□□□□ -0.37
CLN3-248ENST00000636355 HSCBQ8IWL3 235 aa12.74□□□□□ -0.37
CLN3-248ENST00000636355 CELF1Q92879 486 aaKnown RBP12.74□□□□□ -0.37
CLN3-248ENST00000636355 RBM17Q96I25 401 aaKnown RBP12.74□□□□□ -0.37
CLN3-248ENST00000636355 BRIP1Q9BX63 1249 aa12.74□□□□□ -0.37
CLN3-248ENST00000636355 GNL3LQ9NVN8 582 aaKnown RBP12.74□□□□□ -0.37
CLN3-248ENST00000636355 HMG20BQ9P0W2 317 aa12.74□□□□□ -0.37
CLN3-248ENST00000636355 MINPP1Q9UNW1 487 aa12.74□□□□□ -0.37
CLN3-248ENST00000636355 XDHP47989 1333 aa12.73□□□□□ -0.37
CLN3-248ENST00000636355 A0A0D9SFI3 127 aa12.73□□□□□ -0.37
CLN3-248ENST00000636355 ST18O60284 1047 aa12.73□□□□□ -0.37
CLN3-248ENST00000636355 MCAMP43121 646 aa12.73□□□□□ -0.37
CLN3-248ENST00000636355 ZMYM1Q5SVZ6 1142 aa12.73□□□□□ -0.37
CLN3-248ENST00000636355 C15orf52Q6ZUT6 534 aaKnown RBP12.73□□□□□ -0.37
CLN3-248ENST00000636355 KCNB2Q92953 911 aa12.73□□□□□ -0.37
CLN3-248ENST00000636355 RNF113AO15541 343 aaKnown RBP12.72□□□□□ -0.37
CLN3-248ENST00000636355 BBOX1O75936 387 aa12.72□□□□□ -0.37
CLN3-248ENST00000636355 PDE6BP35913 854 aa12.72□□□□□ -0.37
CLN3-248ENST00000636355 MCM2P49736 904 aa12.72□□□□□ -0.37
CLN3-248ENST00000636355 MCMDC2Q4G0Z9 681 aa12.72□□□□□ -0.37
CLN3-248ENST00000636355 CAVIN4Q5BKX8 364 aa12.72□□□□□ -0.37
CLN3-248ENST00000636355 RNF20Q5VTR2 975 aa12.72□□□□□ -0.37
CLN3-248ENST00000636355 ANO8Q9HCE9 1232 aaPredicted RBP12.72□□□□□ -0.37
CLN3-248ENST00000636355 LEMD3Q9Y2U8 911 aa12.72□□□□□ -0.37
CLN3-248ENST00000636355 PARP3Q9Y6F1 533 aa12.72□□□□□ -0.37
CLN3-248ENST00000636355 CACNA1SQ13698 1873 aa12.72□□□□□ -0.37
CLN3-248ENST00000636355 C10orf71Q711Q0 1435 aa12.71□□□□□ -0.37
CLN3-248ENST00000636355 PHKA1P46020 1223 aa12.71□□□□□ -0.37
CLN3-248ENST00000636355 UBE3CQ15386 1083 aa12.71□□□□□ -0.37
CLN3-248ENST00000636355 EZH2Q15910 746 aaKnown RBP12.71□□□□□ -0.37
CLN3-248ENST00000636355 SPATA5Q8NB90 893 aa12.71□□□□□ -0.37
CLN3-248ENST00000636355 SLC16A10Q8TF71 515 aa12.71□□□□□ -0.37
CLN3-248ENST00000636355 APPBP2Q92624 585 aa12.71□□□□□ -0.37
CLN3-248ENST00000636355 MAP4K1Q92918 833 aa12.71□□□□□ -0.37
CLN3-248ENST00000636355 FAM227BQ96M60 508 aa12.71□□□□□ -0.37
CLN3-248ENST00000636355 DSCC1Q9BVC3 393 aa12.71□□□□□ -0.37
CLN3-248ENST00000636355 TBC1D2Q9BYX2 928 aa12.71□□□□□ -0.37
CLN3-248ENST00000636355 IL25Q9H293 177 aa12.71□□□□□ -0.37
CLN3-248ENST00000636355 CHD4Q14839 1912 aa12.7□□□□□ -0.38
CLN3-248ENST00000636355 ZMYM6O95789 1325 aa12.7□□□□□ -0.38
CLN3-248ENST00000636355 MMP10P09238 476 aa12.7□□□□□ -0.38
CLN3-248ENST00000636355 NPR1P16066 1061 aa12.7□□□□□ -0.38
CLN3-248ENST00000636355 ZKSCAN1P17029 563 aaPredicted RBP12.7□□□□□ -0.38
CLN3-248ENST00000636355 ZAP70P43403 619 aa12.7□□□□□ -0.38
CLN3-248ENST00000636355 KCNJ4P48050 445 aa12.7□□□□□ -0.38
CLN3-248ENST00000636355 FKBP4Q02790 459 aaKnown RBP eCLIP12.7□□□□□ -0.38
CLN3-248ENST00000636355 EN1Q05925 392 aaPredicted RBP12.7□□□□□ -0.38
CLN3-248ENST00000636355 RASGRF1Q13972 1273 aa12.7□□□□□ -0.38
CLN3-248ENST00000636355 SCARF1Q14162 830 aa12.7□□□□□ -0.38
CLN3-248ENST00000636355 HELBQ8NG08 1087 aaPredicted RBP12.7□□□□□ -0.38
CLN3-248ENST00000636355 EDC3Q96F86 508 aaKnown RBP12.7□□□□□ -0.38
CLN3-248ENST00000636355 TM6SF1Q9BZW5 370 aa12.7□□□□□ -0.38
CLN3-248ENST00000636355 PODXL2Q9NZ53 605 aa12.7□□□□□ -0.38
CLN3-248ENST00000636355 U3KPZ7 1027 aaPredicted RBP12.7□□□□□ -0.38
CLN3-248ENST00000636355 TIAM2Q8IVF5 1701 aa12.7□□□□□ -0.38
CLN3-248ENST00000636355 RPAP1Q9BWH6 1393 aaPredicted RBP12.69□□□□□ -0.38
CLN3-248ENST00000636355 MAST3O60307 1309 aa12.69□□□□□ -0.38
CLN3-248ENST00000636355 IRS2Q9Y4H2 1338 aa12.69□□□□□ -0.38
CLN3-248ENST00000636355 MSH5O43196 834 aa12.69□□□□□ -0.38
CLN3-248ENST00000636355 TAF5LO75529 589 aa12.69□□□□□ -0.38
CLN3-248ENST00000636355 MAP3K12Q12852 859 aa12.69□□□□□ -0.38
CLN3-248ENST00000636355 KRT32Q14532 448 aa12.69□□□□□ -0.38
CLN3-248ENST00000636355 TSGA10IPQ3SY00 556 aa12.69□□□□□ -0.38
CLN3-248ENST00000636355 DENND2AQ9ULE3 1009 aa12.69□□□□□ -0.38
CLN3-248ENST00000636355 COL1A1P02452 1464 aaPredicted RBP12.69□□□□□ -0.38
CLN3-248ENST00000636355 K7ELQ4 463 aaPredicted RBP12.68□□□□□ -0.38
CLN3-248ENST00000636355 CYP2E1P05181 493 aaPredicted RBP12.68□□□□□ -0.38
CLN3-248ENST00000636355 SRGNP10124 158 aa12.68□□□□□ -0.38
CLN3-248ENST00000636355 ALDH1B1P30837 517 aa12.68□□□□□ -0.38
CLN3-248ENST00000636355 ADD2P35612 726 aa12.68□□□□□ -0.38
CLN3-248ENST00000636355 NECTIN1Q15223 517 aa12.68□□□□□ -0.38
CLN3-248ENST00000636355 ERICH6Q7L0X2 663 aa12.68□□□□□ -0.38
CLN3-248ENST00000636355 FBXO33Q7Z6M2 555 aa12.68□□□□□ -0.38
CLN3-248ENST00000636355 RBM8AQ9Y5S9 174 aaKnown RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms