RNA–Protein interactions for RNA: ENST00000636306.1

CHD2-223, Transcript of chromodomain helicase DNA binding protein 2, human

TSL 5

Gene CHD2, Length 1,755 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD2-223	ENST00000636306	TOM1L2	Q6ZVM7	507 aa		12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	PACS2	Q86VP3	889 aa		12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	EGFL6	Q8IUX8	553 aa		12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	CCAR2	Q8N163	923 aa	Known RBP	12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	GPATCH11	Q8N954	259 aa		12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	RBM28	Q9NW13	759 aa	Known RBP	12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	RAI14	Q9P0K7	980 aa		12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	CLIP2	Q9UDT6	1046 aa		12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	MKRN1	Q9UHC7	482 aa	Known RBP	12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	PLCH1	Q4KWH8	1693 aa		12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	SHANK3	Q9BYB0	1731 aa		12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	UTY	O14607	1347 aa		12.55	□□□□□ -0.4
CHD2-223	ENST00000636306	GLI3	P10071	1580 aa		12.54	□□□□□ -0.4
CHD2-223	ENST00000636306	OAS2	P29728	719 aa	Known RBP	12.54	□□□□□ -0.4
CHD2-223	ENST00000636306	ATP6V1A	P38606	617 aa		12.54	□□□□□ -0.4
CHD2-223	ENST00000636306	ST5	P78524	1137 aa		12.54	□□□□□ -0.4
CHD2-223	ENST00000636306	OS9	Q13438	667 aa	Predicted RBP	12.54	□□□□□ -0.4
CHD2-223	ENST00000636306	LEKR1	Q6ZMV7	388 aa		12.54	□□□□□ -0.4
CHD2-223	ENST00000636306	OTUD7A	Q8TE49	926 aa	Predicted RBP	12.54	□□□□□ -0.4
CHD2-223	ENST00000636306	MRFAP1L1	Q96HT8	127 aa		12.54	□□□□□ -0.4
CHD2-223	ENST00000636306	TACO1	Q9BSH4	297 aa	Known RBP	12.54	□□□□□ -0.4
CHD2-223	ENST00000636306	CBX8	Q9HC52	389 aa		12.54	□□□□□ -0.4
CHD2-223	ENST00000636306	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	12.54	□□□□□ -0.4	7e-8	■■■■□ 20.2
CHD2-223	ENST00000636306	ERVV-2	B6SEH9	535 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	GRM8	O00222	908 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	KCNJ6	P48051	423 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	ERCC6L	Q2NKX8	1250 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	RIC3	Q7Z5B4	369 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	REXO1L1P	Q8IX06	675 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	ZCRB1	Q8TBF4	217 aa	Known RBP	12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	TOMM22	Q9NS69	142 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	ORC3	Q9UBD5	711 aa	Predicted RBP	12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	NRBP1	Q9UHY1	535 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	TTC41P	Q6P2S7	1318 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	COL22A1	Q8NFW1	1626 aa	Predicted RBP	12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	CYP27B1	O15528	508 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	F13A1	P00488	732 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	IL2RB	P14784	551 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	CALR	P27797	417 aa	Known RBP	12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	CORO7	P57737	925 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	ARHGAP29	Q52LW3	1261 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	CCDC158	Q5M9N0	1113 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	RHPN1	Q8TCX5	695 aa		12.53	□□□□□ -0.4
CHD2-223	ENST00000636306	AHDC1	Q5TGY3	1603 aa	Predicted RBP	12.52	□□□□□ -0.4
CHD2-223	ENST00000636306	COL15A1	P39059	1388 aa		12.52	□□□□□ -0.4
CHD2-223	ENST00000636306	NBPF7	P0C2Y1	421 aa	Predicted RBP	12.52	□□□□□ -0.41
CHD2-223	ENST00000636306	TDO2	P48775	406 aa		12.52	□□□□□ -0.41
CHD2-223	ENST00000636306	SMC1A	Q14683	1233 aa	Known RBP	12.52	□□□□□ -0.41
CHD2-223	ENST00000636306	RBM43	Q6ZSC3	357 aa	Known RBP	12.52	□□□□□ -0.41
CHD2-223	ENST00000636306	NUP62CL	Q9H1M0	184 aa		12.52	□□□□□ -0.41
CHD2-223	ENST00000636306	SUFU	Q9UMX1	484 aa		12.52	□□□□□ -0.41
CHD2-223	ENST00000636306	USP42	Q9H9J4	1324 aa	Known RBP	12.52	□□□□□ -0.41
CHD2-223	ENST00000636306	PSD	A5PKW4	1024 aa	Predicted RBP	12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	PATL2	C9JE40	543 aa	Known RBP	12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	ANXA1	P04083	346 aa		12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	SKIL	P12757	684 aa		12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	ZRSR1	Q15695	479 aa	Known RBP	12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	CNTROB	Q8N137	903 aa		12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	CLASRP	Q8N2M8	674 aa	Known RBP	12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	MSL3	Q8N5Y2	521 aa	Known RBP	12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	UBXN4	Q92575	508 aa		12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	FAM107B	Q9H098	131 aa		12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	WNK3	Q9BYP7	1800 aa		12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	LRP6	O75581	1613 aa		12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	EIF3CL	B5ME19	914 aa	Known RBP	12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	STX6	O43752	255 aa		12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	GSDMD	P57764	484 aa		12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	SNW1	Q13573	536 aa	Known RBP	12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	NKX1-1	Q15270	411 aa	Predicted RBP	12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	PROSER3	Q2NL68	480 aa		12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	LUZP1	Q86V48	1076 aa		12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	ANKRD20A12P	Q8NF67	263 aa		12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	ZNF496	Q96IT1	587 aa	Predicted RBP	12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	EIF3C	Q99613	913 aa	Known RBP	12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	METTL22	Q9BUU2	404 aa	Predicted RBP	12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	12.51	□□□□□ -0.41
CHD2-223	ENST00000636306	NUP188	Q5SRE5	1749 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	TCHH	Q07283	1943 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	USP27X	A6NNY8	438 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	KIF3C	O14782	793 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	CCP110	O43303	1012 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	GLRX3	O76003	335 aa	Known RBP	12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	CAST	P20810	708 aa	Known RBP	12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	MAP2K2	P36507	400 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	EVA1C	P58658	441 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	CCZ1B	P86790	482 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	CCZ1	P86791	482 aa	Predicted RBP	12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	SLC39A6	Q13433	755 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	PDIA6	Q15084	440 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	CCDC144B	Q3MJ40	725 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	EFCAB13	Q8IY85	973 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	CCDC144CP	Q8IYA2	1237 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	ESYT1	Q9BSJ8	1104 aa		12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	DDX19A	Q9NUU7	478 aa	Known RBP	12.5	□□□□□ -0.41
CHD2-223	ENST00000636306	KCP	Q6ZWJ8	1503 aa		12.49	□□□□□ -0.41
CHD2-223	ENST00000636306	TBC1D8	O95759	1140 aa		12.49	□□□□□ -0.41
CHD2-223	ENST00000636306	USP8	P40818	1118 aa		12.49	□□□□□ -0.41
CHD2-223	ENST00000636306	AIMP1	Q12904	312 aa	Known RBP	12.49	□□□□□ -0.41
CHD2-223	ENST00000636306	ANO6	Q4KMQ2	910 aa		12.49	□□□□□ -0.41

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