RNA–Protein interactions for RNA: ENST00000627232.2

PNKP-220, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 1,530 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-220ENST00000627232 LARGE1O95461 756 aa26.3■■□□□ 1.8
PNKP-220ENST00000627232 CYP21A2P08686 494 aa26.3■■□□□ 1.8
PNKP-220ENST00000627232 IGHMBP2P38935 993 aaKnown RBP26.3■■□□□ 1.8
PNKP-220ENST00000627232 MCTP1Q6DN14 999 aa26.3■■□□□ 1.8
PNKP-220ENST00000627232 APPBP2Q92624 585 aa26.3■■□□□ 1.8
PNKP-220ENST00000627232 DDX24Q9GZR7 859 aaKnown RBP eCLIP26.3■■□□□ 1.82e-7■■■■■ 30.6
PNKP-220ENST00000627232 NARFQ9UHQ1 456 aa26.3■■□□□ 1.8
PNKP-220ENST00000627232 SMC3Q9UQE7 1217 aa26.3■■□□□ 1.8
PNKP-220ENST00000627232 TAF6LQ9Y6J9 622 aa26.3■■□□□ 1.8
PNKP-220ENST00000627232 HSPD1P10809 573 aaKnown RBP26.29■■□□□ 1.8
PNKP-220ENST00000627232 SEC31BQ9NQW1 1179 aa26.29■■□□□ 1.8
PNKP-220ENST00000627232 M0R2C6 588 aa26.29■■□□□ 1.8
PNKP-220ENST00000627232 HMGB1P09429 215 aaKnown RBP26.29■■□□□ 1.8
PNKP-220ENST00000627232 HSPA1LP34931 641 aa26.29■■□□□ 1.8
PNKP-220ENST00000627232 ME3Q16798 604 aa26.29■■□□□ 1.8
PNKP-220ENST00000627232 CCDC102BQ68D86 513 aa26.29■■□□□ 1.8
PNKP-220ENST00000627232 OSBP2Q969R2 916 aa26.29■■□□□ 1.8
PNKP-220ENST00000627232 LARP6Q9BRS8 491 aaKnown RBP26.29■■□□□ 1.8
PNKP-220ENST00000627232 TPCN1Q9ULQ1 816 aa26.29■■□□□ 1.8
PNKP-220ENST00000627232 SF3B3Q15393 1217 aaKnown RBP26.28■■□□□ 1.8
PNKP-220ENST00000627232 KLHL40Q2TBA0 621 aa26.28■■□□□ 1.8
PNKP-220ENST00000627232 SLFNL1Q499Z3 407 aa26.28■■□□□ 1.8
PNKP-220ENST00000627232 CDC5LQ99459 802 aaKnown RBP26.28■■□□□ 1.8
PNKP-220ENST00000627232 TRPC5Q9UL62 973 aaPredicted RBP26.28■■□□□ 1.8
PNKP-220ENST00000627232 TOB2Q14106 344 aaPredicted RBP26.27■■□□□ 1.8
PNKP-220ENST00000627232 SLC10A5Q5PT55 438 aa26.27■■□□□ 1.8
PNKP-220ENST00000627232 CCDC83Q8IWF9 413 aa26.27■■□□□ 1.8
PNKP-220ENST00000627232 LMBRD1Q9NUN5 540 aa26.27■■□□□ 1.8
PNKP-220ENST00000627232 CCNL1Q9UK58 526 aaPredicted RBP26.27■■□□□ 1.8
PNKP-220ENST00000627232 A0A1B0GUL6 1792 aa26.27■■□□□ 1.8
PNKP-220ENST00000627232 DOCK2Q92608 1830 aa26.27■■□□□ 1.8
PNKP-220ENST00000627232 PDIA4P13667 645 aaKnown RBP26.26■■□□□ 1.79
PNKP-220ENST00000627232 KCNQ4P56696 695 aa26.26■■□□□ 1.79
PNKP-220ENST00000627232 BCL2L12Q9HB09 334 aa26.26■■□□□ 1.79
PNKP-220ENST00000627232 CTNNA3Q9UI47 895 aa26.26■■□□□ 1.79
PNKP-220ENST00000627232 PHKA1P46020 1223 aa26.25■■□□□ 1.79
PNKP-220ENST00000627232 WASHC4Q2M389 1173 aa26.25■■□□□ 1.79
PNKP-220ENST00000627232 ERFEQ4G0M1 354 aa26.25■■□□□ 1.79
PNKP-220ENST00000627232 NYXQ9GZU5 481 aa26.25■■□□□ 1.79
PNKP-220ENST00000627232 ST3GAL1Q11201 340 aa26.24■■□□□ 1.79
PNKP-220ENST00000627232 L1TD1Q5T7N2 865 aaKnown RBP26.24■■□□□ 1.79
PNKP-220ENST00000627232 PI16Q6UXB8 463 aa26.24■■□□□ 1.79
PNKP-220ENST00000627232 HELBQ8NG08 1087 aaPredicted RBP26.24■■□□□ 1.79
PNKP-220ENST00000627232 GZF1Q9H116 711 aaPredicted RBP26.24■■□□□ 1.79
PNKP-220ENST00000627232 MYO5AQ9Y4I1 1855 aaKnown RBP26.24■■□□□ 1.79
PNKP-220ENST00000627232 C4BP0C0L5 1744 aa26.24■■□□□ 1.79
PNKP-220ENST00000627232 ADD2P35612 726 aa26.24■■□□□ 1.79
PNKP-220ENST00000627232 UBE3CQ15386 1083 aa26.24■■□□□ 1.79
PNKP-220ENST00000627232 ISY1Q9ULR0 285 aaKnown RBP26.24■■□□□ 1.79
PNKP-220ENST00000627232 RTCBQ9Y3I0 505 aaKnown RBP26.24■■□□□ 1.79
PNKP-220ENST00000627232 GNPATO15228 680 aa26.23■■□□□ 1.79
PNKP-220ENST00000627232 COL9A3Q14050 684 aaPredicted RBP26.23■■□□□ 1.79
PNKP-220ENST00000627232 TBC1D9BQ66K14 1250 aa26.23■■□□□ 1.79
PNKP-220ENST00000627232 DDX49Q9Y6V7 483 aaKnown RBP26.23■■□□□ 1.79
PNKP-220ENST00000627232 FSD2A1L4K1 749 aa26.22■■□□□ 1.79
PNKP-220ENST00000627232 STX6O43752 255 aa26.22■■□□□ 1.79
PNKP-220ENST00000627232 ZPR1O75312 459 aa26.22■■□□□ 1.79
PNKP-220ENST00000627232 GJB2P29033 226 aa26.22■■□□□ 1.79
PNKP-220ENST00000627232 STOX1Q6ZVD7 989 aa26.22■■□□□ 1.79
PNKP-220ENST00000627232 C4AP0C0L4 1744 aa26.21■■□□□ 1.79
PNKP-220ENST00000627232 ZSCAN22P10073 491 aaPredicted RBP26.21■■□□□ 1.79
PNKP-220ENST00000627232 SYT1P21579 422 aa26.21■■□□□ 1.79
PNKP-220ENST00000627232 DHX32Q7L7V1 743 aaKnown RBP26.21■■□□□ 1.79
PNKP-220ENST00000627232 PIH1D3Q9NQM4 214 aaKnown RBP26.21■■□□□ 1.79
PNKP-220ENST00000627232 CHRNDQ07001 517 aa26.2■■□□□ 1.79
PNKP-220ENST00000627232 FAM182BQ5T319 152 aa26.2■■□□□ 1.79
PNKP-220ENST00000627232 FOXD4L5Q5VV16 416 aaPredicted RBP26.2■■□□□ 1.79
PNKP-220ENST00000627232 ANKRD18AQ8IVF6 992 aa26.2■■□□□ 1.79
PNKP-220ENST00000627232 SEPT12Q8IYM1 358 aa26.2■■□□□ 1.79
PNKP-220ENST00000627232 FOXD4L4Q8WXT5 416 aaPredicted RBP26.2■■□□□ 1.79
PNKP-220ENST00000627232 TCEANC2Q96MN5 208 aa26.2■■□□□ 1.79
PNKP-220ENST00000627232 PUS7LQ9H0K6 701 aaKnown RBP26.2■■□□□ 1.79
PNKP-220ENST00000627232 GOLGA6L3A6NEY3 463 aa26.19■■□□□ 1.78
PNKP-220ENST00000627232 E7EWF7 191 aa26.19■■□□□ 1.78
PNKP-220ENST00000627232 Q6ZUG5 572 aa26.19■■□□□ 1.78
PNKP-220ENST00000627232 SPATA5Q8NB90 893 aa26.19■■□□□ 1.78
PNKP-220ENST00000627232 SETDB2Q96T68 719 aa26.19■■□□□ 1.78
PNKP-220ENST00000627232 EXOSC10Q01780 885 aaKnown RBP26.19■■□□□ 1.78
PNKP-220ENST00000627232 SLC9C2Q5TAH2 1124 aa26.19■■□□□ 1.78
PNKP-220ENST00000627232 NECAB1Q8N987 351 aa26.19■■□□□ 1.78
PNKP-220ENST00000627232 BCL11BQ9C0K0 894 aaPredicted RBP26.19■■□□□ 1.78
PNKP-220ENST00000627232 BSDC1Q9NW68 430 aaPredicted RBP26.19■■□□□ 1.78
PNKP-220ENST00000627232 COL4A1P02462 1669 aa26.18■■□□□ 1.78
PNKP-220ENST00000627232 FOXP2O15409 715 aa26.18■■□□□ 1.78
PNKP-220ENST00000627232 GPAA1O43292 621 aa26.18■■□□□ 1.78
PNKP-220ENST00000627232 PRPF40AO75400 957 aaKnown RBP26.18■■□□□ 1.78
PNKP-220ENST00000627232 GTF2E1P29083 439 aaPredicted RBP26.18■■□□□ 1.78
PNKP-220ENST00000627232 IMMTQ16891 758 aaKnown RBP26.18■■□□□ 1.78
PNKP-220ENST00000627232 AGXT2Q9BYV1 514 aa26.18■■□□□ 1.78
PNKP-220ENST00000627232 BICDL1Q6ZP65 573 aa26.17■■□□□ 1.78
PNKP-220ENST00000627232 SRP68Q9UHB9 627 aaKnown RBP26.17■■□□□ 1.78
PNKP-220ENST00000627232 ATP6V1DQ9Y5K8 247 aa26.17■■□□□ 1.78
PNKP-220ENST00000627232 PDE6AP16499 860 aa26.16■■□□□ 1.78
PNKP-220ENST00000627232 PDCP20941 246 aa26.16■■□□□ 1.78
PNKP-220ENST00000627232 C3orf67Q6ZVT6 689 aa26.16■■□□□ 1.78
PNKP-220ENST00000627232 IDH1O75874 414 aaKnown RBP26.15■■□□□ 1.78
PNKP-220ENST00000627232 F13A1P00488 732 aa26.15■■□□□ 1.78
PNKP-220ENST00000627232 RASGRF1Q13972 1273 aa26.15■■□□□ 1.78
PNKP-220ENST00000627232 UBE4AQ14139 1066 aa26.15■■□□□ 1.78
PNKP-220ENST00000627232 NBPF5PQ86XG9 351 aaPredicted RBP26.15■■□□□ 1.78
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms