RNA–Protein interactions for RNA: ENST00000596365.5

LINC00649-208, long intergenic non-protein coding RNA 649, human

TSL 5

Gene LINC00649, Length 682 nt, Biotype antisense RNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LINC00649-208	ENST00000596365	CUL9	Q8IWT3	2517 aa		11.28	□□□□□ -0.6
LINC00649-208	ENST00000596365	HTATSF1	O43719	755 aa	Known RBP	11.27	□□□□□ -0.61
LINC00649-208	ENST00000596365	RSPH6A	Q9H0K4	717 aa		11.27	□□□□□ -0.61
LINC00649-208	ENST00000596365	PSME4	Q14997	1843 aa		11.27	□□□□□ -0.61
LINC00649-208	ENST00000596365	ASTN2	O75129	1339 aa	Predicted RBP	11.27	□□□□□ -0.61
LINC00649-208	ENST00000596365	RIMBP2	O15034	1052 aa		11.26	□□□□□ -0.61
LINC00649-208	ENST00000596365	ECE2	O60344	883 aa		11.26	□□□□□ -0.61
LINC00649-208	ENST00000596365	SCARF1	Q14162	830 aa		11.26	□□□□□ -0.61
LINC00649-208	ENST00000596365	ANGEL2	Q5VTE6	544 aa	Known RBP	11.26	□□□□□ -0.61
LINC00649-208	ENST00000596365	TRIM17	Q9Y577	477 aa		11.26	□□□□□ -0.61
LINC00649-208	ENST00000596365	PITPNM2	Q9BZ72	1349 aa		11.26	□□□□□ -0.61
LINC00649-208	ENST00000596365	RTL9	Q8NET4	1388 aa		11.26	□□□□□ -0.61
LINC00649-208	ENST00000596365	UBE2Q2L	H0YL09	131 aa		11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	C6orf229	H3BNL8	230 aa		11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	ALDH1A1	P00352	501 aa		11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	VIL1	P09327	827 aa	Known RBP	11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	HCLS1	P14317	486 aa	Predicted RBP	11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	DCTN1	Q14203	1278 aa		11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	CC2D1B	Q5T0F9	858 aa	Known RBP	11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	MOB2	Q70IA6	237 aa		11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	SLC17A8	Q8NDX2	589 aa		11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	PNISR	Q8TF01	805 aa	Known RBP	11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	EYA3	Q99504	573 aa		11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	KCNQ5	Q9NR82	932 aa		11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	NSFL1C	Q9UNZ2	370 aa	Known RBP	11.25	□□□□□ -0.61
LINC00649-208	ENST00000596365	EN2	P19622	333 aa	Predicted RBP	11.24	□□□□□ -0.61
LINC00649-208	ENST00000596365	ZNF280A	P59817	542 aa	Predicted RBP	11.24	□□□□□ -0.61
LINC00649-208	ENST00000596365	TTLL12	Q14166	644 aa	Predicted RBP	11.24	□□□□□ -0.61
LINC00649-208	ENST00000596365	DOK7	Q18PE1	504 aa		11.24	□□□□□ -0.61
LINC00649-208	ENST00000596365	OTOP1	Q7RTM1	612 aa		11.24	□□□□□ -0.61
LINC00649-208	ENST00000596365	NECTIN2	Q92692	538 aa		11.24	□□□□□ -0.61
LINC00649-208	ENST00000596365	R3HDML	Q9H3Y0	253 aa		11.24	□□□□□ -0.61
LINC00649-208	ENST00000596365	MIS18A	Q9NYP9	233 aa		11.24	□□□□□ -0.61
LINC00649-208	ENST00000596365	DLG5	Q8TDM6	1919 aa		11.24	□□□□□ -0.61
LINC00649-208	ENST00000596365	ERBB4	Q15303	1308 aa		11.24	□□□□□ -0.61
LINC00649-208	ENST00000596365	ZNF609	O15014	1411 aa		11.24	□□□□□ -0.61
LINC00649-208	ENST00000596365	COL6A3	P12111	3177 aa		11.23	□□□□□ -0.61
LINC00649-208	ENST00000596365	PPP1R37	O75864	691 aa		11.23	□□□□□ -0.61
LINC00649-208	ENST00000596365	TCIRG1	Q13488	830 aa		11.23	□□□□□ -0.61
LINC00649-208	ENST00000596365	AGBL3	Q8NEM8	1001 aa		11.23	□□□□□ -0.61
LINC00649-208	ENST00000596365	POLL	Q9UGP5	575 aa		11.23	□□□□□ -0.61
LINC00649-208	ENST00000596365	LAMB1	P07942	1786 aa		11.23	□□□□□ -0.61
LINC00649-208	ENST00000596365	NF2	P35240	595 aa		11.22	□□□□□ -0.61
LINC00649-208	ENST00000596365	EIF4A1	P60842	406 aa	Known RBP	11.22	□□□□□ -0.61
LINC00649-208	ENST00000596365	HSP90AB3P	Q58FF7	597 aa		11.22	□□□□□ -0.61
LINC00649-208	ENST00000596365	ARMC5	Q96C12	935 aa		11.22	□□□□□ -0.61
LINC00649-208	ENST00000596365	CFAP53	Q96M91	514 aa		11.22	□□□□□ -0.61
LINC00649-208	ENST00000596365	TRMT112	Q9UI30	125 aa	Known RBP	11.22	□□□□□ -0.61
LINC00649-208	ENST00000596365	NUDC	Q9Y266	331 aa		11.22	□□□□□ -0.61
LINC00649-208	ENST00000596365	PTPN22	Q9Y2R2	807 aa		11.22	□□□□□ -0.61
LINC00649-208	ENST00000596365	RANBP2	P49792	3224 aa	Known RBP	11.21	□□□□□ -0.61
LINC00649-208	ENST00000596365	SH3TC1	Q8TE82	1336 aa		11.21	□□□□□ -0.61
LINC00649-208	ENST00000596365	PER1	O15534	1290 aa	Predicted RBP	11.21	□□□□□ -0.61
LINC00649-208	ENST00000596365	GPSM2	P81274	684 aa		11.21	□□□□□ -0.61
LINC00649-208	ENST00000596365	LCE2D	Q5TA82	110 aa	Predicted RBP	11.21	□□□□□ -0.61
LINC00649-208	ENST00000596365	RSBN1L	Q6PCB5	846 aa	Predicted RBP	11.21	□□□□□ -0.61
LINC00649-208	ENST00000596365	TMEM92	Q6UXU6	159 aa		11.21	□□□□□ -0.61
LINC00649-208	ENST00000596365	NLRP10	Q86W26	655 aa		11.21	□□□□□ -0.61
LINC00649-208	ENST00000596365	ERO1A	Q96HE7	468 aa		11.21	□□□□□ -0.61
LINC00649-208	ENST00000596365	ZC3H12C	Q9C0D7	883 aa	Known RBP	11.21	□□□□□ -0.61
LINC00649-208	ENST00000596365	MYOZ2	Q9NPC6	264 aa		11.21	□□□□□ -0.61
LINC00649-208	ENST00000596365		H0YGN5	161 aa		11.2	□□□□□ -0.62
LINC00649-208	ENST00000596365	SNPH	O15079	494 aa		11.2	□□□□□ -0.62
LINC00649-208	ENST00000596365	USP17L8	P0C7I0	530 aa		11.2	□□□□□ -0.62
LINC00649-208	ENST00000596365	INHBE	P58166	350 aa		11.2	□□□□□ -0.62
LINC00649-208	ENST00000596365	ARMC9	Q7Z3E5	817 aa		11.2	□□□□□ -0.62
LINC00649-208	ENST00000596365	TBC1D16	Q8TBP0	767 aa		11.2	□□□□□ -0.62
LINC00649-208	ENST00000596365	MANSC4	A6NHS7	340 aa	Predicted RBP	11.19	□□□□□ -0.62
LINC00649-208	ENST00000596365	U2AF1L5	P0DN76	240 aa	Predicted RBP	11.19	□□□□□ -0.62
LINC00649-208	ENST00000596365	U2AF1	Q01081	240 aa	Known RBP eCLIP	11.19	□□□□□ -0.62
LINC00649-208	ENST00000596365	PTPN12	Q05209	780 aa	Known RBP	11.19	□□□□□ -0.62
LINC00649-208	ENST00000596365	PRAMEF18	Q5VWM3	479 aa		11.19	□□□□□ -0.62
LINC00649-208	ENST00000596365	SPRYD7	Q5W111	196 aa		11.19	□□□□□ -0.62
LINC00649-208	ENST00000596365	CELF1	Q92879	486 aa	Known RBP	11.19	□□□□□ -0.62
LINC00649-208	ENST00000596365	THUMPD2	Q9BTF0	503 aa	Known RBP	11.19	□□□□□ -0.62
LINC00649-208	ENST00000596365	LRP10	Q7Z4F1	713 aa		11.18	□□□□□ -0.62
LINC00649-208	ENST00000596365	GML	Q99445	158 aa		11.18	□□□□□ -0.62
LINC00649-208	ENST00000596365	EFCC1	Q9HA90	598 aa		11.18	□□□□□ -0.62
LINC00649-208	ENST00000596365	SCAF8	Q9UPN6	1271 aa	Known RBP	11.18	□□□□□ -0.62
LINC00649-208	ENST00000596365	PDIA6	Q15084	440 aa		11.17	□□□□□ -0.62
LINC00649-208	ENST00000596365	SF3B3	Q15393	1217 aa	Known RBP	11.17	□□□□□ -0.62
LINC00649-208	ENST00000596365	NBPF11	Q86T75	865 aa		11.17	□□□□□ -0.62
LINC00649-208	ENST00000596365	CD99L2	Q8TCZ2	262 aa		11.17	□□□□□ -0.62
LINC00649-208	ENST00000596365	ZNF333	Q96JL9	665 aa		11.17	□□□□□ -0.62
LINC00649-208	ENST00000596365	PODXL2	Q9NZ53	605 aa		11.17	□□□□□ -0.62
LINC00649-208	ENST00000596365	ST18	O60284	1047 aa		11.16	□□□□□ -0.62
LINC00649-208	ENST00000596365	UFL1	O94874	794 aa		11.16	□□□□□ -0.62
LINC00649-208	ENST00000596365	RPS8	P62241	208 aa	Known RBP	11.16	□□□□□ -0.62
LINC00649-208	ENST00000596365	CNGB1	Q14028	1251 aa	Predicted RBP	11.16	□□□□□ -0.62
LINC00649-208	ENST00000596365	SLC4A8	Q2Y0W8	1093 aa		11.16	□□□□□ -0.62
LINC00649-208	ENST00000596365	NBPF9	Q3BBW0	867 aa		11.16	□□□□□ -0.62
LINC00649-208	ENST00000596365	LDLRAD1	Q5T700	205 aa		11.16	□□□□□ -0.62
LINC00649-208	ENST00000596365	OTUD7B	Q6GQQ9	843 aa		11.16	□□□□□ -0.62
LINC00649-208	ENST00000596365	GGA1	Q9UJY5	639 aa		11.16	□□□□□ -0.62
LINC00649-208	ENST00000596365	COL4A1	P02462	1669 aa		11.16	□□□□□ -0.62
LINC00649-208	ENST00000596365	USP17L3	A6NCW0	530 aa		11.15	□□□□□ -0.62
LINC00649-208	ENST00000596365	USP17L4	A6NCW7	530 aa		11.15	□□□□□ -0.62
LINC00649-208	ENST00000596365	NEFM	P07197	916 aa		11.15	□□□□□ -0.62
LINC00649-208	ENST00000596365	ZBTB48	P10074	688 aa	Predicted RBP	11.15	□□□□□ -0.62
LINC00649-208	ENST00000596365	EIF2S2	P20042	333 aa	Known RBP	11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms