RNA–Protein interactions for RNA: ENST00000589349.5

DNMT1-219, Transcript of DNA methyltransferase 1, human

TSL 4

Gene DNMT1, Length 603 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-219	ENST00000589349	MAP3K19	Q56UN5	1328 aa		11.28	□□□□□ -0.6
DNMT1-219	ENST00000589349	EP400	Q96L91	3159 aa		11.28	□□□□□ -0.6
DNMT1-219	ENST00000589349	NFAT5	O94916	1531 aa		11.27	□□□□□ -0.61
DNMT1-219	ENST00000589349	PALM3	A6NDB9	673 aa	Predicted RBP	11.27	□□□□□ -0.61
DNMT1-219	ENST00000589349	FIGNL2	A6NMB9	653 aa		11.27	□□□□□ -0.61
DNMT1-219	ENST00000589349	SOBP	A7XYQ1	873 aa		11.27	□□□□□ -0.61
DNMT1-219	ENST00000589349	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.27	□□□□□ -0.61
DNMT1-219	ENST00000589349	SYTL4	Q96C24	671 aa	Predicted RBP	11.27	□□□□□ -0.61
DNMT1-219	ENST00000589349	CAMKK2	Q96RR4	588 aa		11.27	□□□□□ -0.61
DNMT1-219	ENST00000589349	ESYT1	Q9BSJ8	1104 aa		11.27	□□□□□ -0.61
DNMT1-219	ENST00000589349	MAFB	Q9Y5Q3	323 aa	Predicted RBP	11.27	□□□□□ -0.61
DNMT1-219	ENST00000589349	RGPD1	P0DJD0	1748 aa		11.26	□□□□□ -0.61
DNMT1-219	ENST00000589349	HOXC9	P31274	260 aa		11.26	□□□□□ -0.61
DNMT1-219	ENST00000589349	ATP1A2	P50993	1020 aa		11.26	□□□□□ -0.61
DNMT1-219	ENST00000589349	GTF2I	P78347	998 aa		11.26	□□□□□ -0.61
DNMT1-219	ENST00000589349	CNGB1	Q14028	1251 aa	Predicted RBP	11.26	□□□□□ -0.61
DNMT1-219	ENST00000589349	USHBP1	Q8N6Y0	703 aa		11.26	□□□□□ -0.61
DNMT1-219	ENST00000589349	CNKSR1	Q969H4	720 aa		11.26	□□□□□ -0.61
DNMT1-219	ENST00000589349	RGPD5	Q99666	1765 aa		11.26	□□□□□ -0.61
DNMT1-219	ENST00000589349	NSD3	Q9BZ95	1437 aa		11.26	□□□□□ -0.61
DNMT1-219	ENST00000589349	IL2RA	P01589	272 aa		11.25	□□□□□ -0.61
DNMT1-219	ENST00000589349	SLC27A3	Q5K4L6	730 aa		11.25	□□□□□ -0.61
DNMT1-219	ENST00000589349	LYSMD3	Q7Z3D4	306 aa		11.25	□□□□□ -0.61
DNMT1-219	ENST00000589349	XAGE2	Q96GT9	111 aa		11.25	□□□□□ -0.61
DNMT1-219	ENST00000589349	CGNL1	Q0VF96	1302 aa		11.25	□□□□□ -0.61
DNMT1-219	ENST00000589349	SMG6	Q86US8	1419 aa	Known RBP	11.25	□□□□□ -0.61
DNMT1-219	ENST00000589349	GDF10	P55107	478 aa		11.24	□□□□□ -0.61
DNMT1-219	ENST00000589349	PTF1A	Q7RTS3	328 aa		11.24	□□□□□ -0.61
DNMT1-219	ENST00000589349	RAPGEF4	Q8WZA2	1011 aa		11.24	□□□□□ -0.61
DNMT1-219	ENST00000589349	ETNK1	Q9HBU6	452 aa		11.24	□□□□□ -0.61
DNMT1-219	ENST00000589349	PCDHGA11	Q9Y5H2	935 aa		11.24	□□□□□ -0.61
DNMT1-219	ENST00000589349	COL18A1	P39060	1754 aa		11.23	□□□□□ -0.61
DNMT1-219	ENST00000589349	KCNQ2	O43526	872 aa		11.23	□□□□□ -0.61
DNMT1-219	ENST00000589349	HSP90AB2P	Q58FF8	381 aa		11.23	□□□□□ -0.61
DNMT1-219	ENST00000589349	PANK3	Q9H999	370 aa		11.23	□□□□□ -0.61
DNMT1-219	ENST00000589349	NXF1	Q9UBU9	619 aa	Known RBP	11.23	□□□□□ -0.61
DNMT1-219	ENST00000589349	PPP1R1B	Q9UD71	204 aa	Predicted RBP	11.23	□□□□□ -0.61
DNMT1-219	ENST00000589349	MKRN1	Q9UHC7	482 aa	Known RBP	11.23	□□□□□ -0.61
DNMT1-219	ENST00000589349	LTN1	O94822	1766 aa		11.23	□□□□□ -0.61
DNMT1-219	ENST00000589349	INHA	P05111	366 aa		11.22	□□□□□ -0.61
DNMT1-219	ENST00000589349	TAT	P17735	454 aa	Predicted RBP	11.22	□□□□□ -0.61
DNMT1-219	ENST00000589349	GTF2E1	P29083	439 aa	Predicted RBP	11.22	□□□□□ -0.61
DNMT1-219	ENST00000589349	SCNN1D	P51172	638 aa		11.22	□□□□□ -0.61
DNMT1-219	ENST00000589349	NPAS3	Q8IXF0	933 aa		11.22	□□□□□ -0.61
DNMT1-219	ENST00000589349	ZCRB1	Q8TBF4	217 aa	Known RBP	11.22	□□□□□ -0.61
DNMT1-219	ENST00000589349	PARD3	Q8TEW0	1356 aa		11.22	□□□□□ -0.61
DNMT1-219	ENST00000589349	ZNF775	Q96BV0	537 aa	Predicted RBP	11.22	□□□□□ -0.61
DNMT1-219	ENST00000589349	KAT6B	Q8WYB5	2073 aa		11.21	□□□□□ -0.61
DNMT1-219	ENST00000589349	PARP4	Q9UKK3	1724 aa	Known RBP	11.21	□□□□□ -0.61
DNMT1-219	ENST00000589349	CENPC	Q03188	943 aa		11.21	□□□□□ -0.61
DNMT1-219	ENST00000589349	GRIP2	Q9C0E4	1043 aa		11.21	□□□□□ -0.61
DNMT1-219	ENST00000589349	STK32B	Q9NY57	414 aa		11.21	□□□□□ -0.61
DNMT1-219	ENST00000589349	LRRC37A3	O60309	1634 aa		11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	DISP2	A7MBM2	1401 aa		11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	PLSCR1	O15162	318 aa		11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	LMOD1	P29536	600 aa	Predicted RBP	11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	PTS	Q03393	145 aa		11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	NBPF6	Q5VWK0	638 aa		11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	PRICKLE2	Q7Z3G6	844 aa		11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	MORC1	Q86VD1	984 aa		11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	CCDC97	Q96F63	343 aa	Predicted RBP	11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	NBPF4	Q96M43	638 aa		11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	DNAAF2	Q9NVR5	837 aa	Known RBP	11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	KNSTRN	Q9Y448	316 aa		11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	HRH3	Q9Y5N1	445 aa		11.2	□□□□□ -0.62
DNMT1-219	ENST00000589349	ABCC6	O95255	1503 aa		11.19	□□□□□ -0.62
DNMT1-219	ENST00000589349	TNS2	Q63HR2	1409 aa		11.19	□□□□□ -0.62
DNMT1-219	ENST00000589349	TERT	O14746	1132 aa	Known RBP	11.19	□□□□□ -0.62
DNMT1-219	ENST00000589349	STAU1	O95793	577 aa	Known RBP	11.19	□□□□□ -0.62
DNMT1-219	ENST00000589349	TLR1	Q15399	786 aa		11.19	□□□□□ -0.62
DNMT1-219	ENST00000589349	TXNRD1	Q16881	649 aa		11.19	□□□□□ -0.62
DNMT1-219	ENST00000589349	OGFOD1	Q8N543	542 aa		11.19	□□□□□ -0.62
DNMT1-219	ENST00000589349	TNS1	Q9HBL0	1735 aa	Known RBP	11.18	□□□□□ -0.62
DNMT1-219	ENST00000589349	RTL1	A6NKG5	1358 aa		11.18	□□□□□ -0.62
DNMT1-219	ENST00000589349	FLT4	P35916	1363 aa		11.18	□□□□□ -0.62
DNMT1-219	ENST00000589349	SPATA31C2	B4DYI2	1134 aa		11.18	□□□□□ -0.62
DNMT1-219	ENST00000589349	BACH1	O14867	736 aa		11.18	□□□□□ -0.62
DNMT1-219	ENST00000589349	LARGE2	Q8N3Y3	721 aa		11.18	□□□□□ -0.62
DNMT1-219	ENST00000589349	SLC16A10	Q8TF71	515 aa		11.18	□□□□□ -0.62
DNMT1-219	ENST00000589349	SERPINA10	Q9UK55	444 aa		11.18	□□□□□ -0.62
DNMT1-219	ENST00000589349	RBM19	Q9Y4C8	960 aa	Known RBP	11.18	□□□□□ -0.62
DNMT1-219	ENST00000589349	TMEM229A	B2RXF0	380 aa		11.17	□□□□□ -0.62
DNMT1-219	ENST00000589349	GNAS	Q5JWF2	1037 aa		11.17	□□□□□ -0.62
DNMT1-219	ENST00000589349	FHDC1	Q9C0D6	1143 aa	Predicted RBP	11.17	□□□□□ -0.62
DNMT1-219	ENST00000589349	SPON1	Q9HCB6	807 aa		11.17	□□□□□ -0.62
DNMT1-219	ENST00000589349	INSR	P06213	1382 aa		11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	ZBTB7A	O95365	584 aa		11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	RASA1	P20936	1047 aa		11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	SMTN	P53814	917 aa		11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	CLDN10	P78369	228 aa		11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	WDR44	Q5JSH3	913 aa		11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	CCDC102B	Q68D86	513 aa		11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	TMEM214	Q6NUQ4	689 aa	Known RBP	11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	TAS1R3	Q7RTX0	852 aa		11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	TPCN2	Q8NHX9	752 aa		11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	SLC4A9	Q96Q91	983 aa		11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	VRTN	Q9H8Y1	702 aa		11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	SERTAD1	Q9UHV2	236 aa		11.16	□□□□□ -0.62
DNMT1-219	ENST00000589349	USP54	Q70EL1	1684 aa		11.15	□□□□□ -0.62

Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms