RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 OVOS2A0A0G2JMS6 1433 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 OVOS2A0A0J9YW53 1432 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 BCL9O00512 1426 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 OVOS2Q6IE36 1432 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 VIL1P09327 827 aaKnown RBP8.72□□□□□ -1.01
VPS53-217ENST00000575100 PPP4CP60510 307 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 RACK1P63244 317 aaKnown RBP8.72□□□□□ -1.01
VPS53-217ENST00000575100 UBE4AQ14139 1066 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 ODR4Q5SWX8 454 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 NBPF14Q5TI25 921 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 NLRP13Q86W25 1043 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 ABTB2Q8N961 1025 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 SENP7Q9BQF6 1050 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 EMILIN1Q9Y6C2 1016 aa8.72□□□□□ -1.01
VPS53-217ENST00000575100 KIF20BQ96Q89 1820 aa8.71□□□□□ -1.01
VPS53-217ENST00000575100 RGPD5Q99666 1765 aa8.71□□□□□ -1.01
VPS53-217ENST00000575100 AATKQ6ZMQ8 1374 aa8.71□□□□□ -1.02
VPS53-217ENST00000575100 CCDC189A1A4V9 331 aa8.71□□□□□ -1.02
VPS53-217ENST00000575100 EXOC5O00471 708 aa8.71□□□□□ -1.02
VPS53-217ENST00000575100 WDHD1O75717 1129 aaPredicted RBP8.71□□□□□ -1.02
VPS53-217ENST00000575100 GCP02774 474 aa8.71□□□□□ -1.02
VPS53-217ENST00000575100 MTMR2Q13614 643 aa8.71□□□□□ -1.02
VPS53-217ENST00000575100 MORC1Q86VD1 984 aa8.71□□□□□ -1.02
VPS53-217ENST00000575100 PRIMPOLQ96LW4 560 aa8.71□□□□□ -1.02
VPS53-217ENST00000575100 TMX1Q9H3N1 280 aa8.71□□□□□ -1.02
VPS53-217ENST00000575100 USP54Q70EL1 1684 aa8.7□□□□□ -1.02
VPS53-217ENST00000575100 GYS2P54840 703 aa8.7□□□□□ -1.02
VPS53-217ENST00000575100 DSC3Q14574 896 aa8.7□□□□□ -1.02
VPS53-217ENST00000575100 ZNF594Q96JF6 807 aaPredicted RBP8.7□□□□□ -1.02
VPS53-217ENST00000575100 IER2Q9BTL4 223 aa8.7□□□□□ -1.02
VPS53-217ENST00000575100 ABCC6O95255 1503 aa8.7□□□□□ -1.02
VPS53-217ENST00000575100 NSD2O96028 1365 aa8.7□□□□□ -1.02
VPS53-217ENST00000575100 BDNFP23560 247 aa8.7□□□□□ -1.02
VPS53-217ENST00000575100 MAP9Q49MG5 647 aa8.7□□□□□ -1.02
VPS53-217ENST00000575100 NBPF6Q5VWK0 638 aa8.7□□□□□ -1.02
VPS53-217ENST00000575100 CCSAPQ6IQ19 270 aaPredicted RBP8.7□□□□□ -1.02
VPS53-217ENST00000575100 MKL1Q969V6 931 aa8.7□□□□□ -1.02
VPS53-217ENST00000575100 NBPF4Q96M43 638 aa8.7□□□□□ -1.02
VPS53-217ENST00000575100 ANKRD26Q9UPS8 1709 aa8.69□□□□□ -1.02
VPS53-217ENST00000575100 PPP1R12AO14974 1030 aaPredicted RBP8.69□□□□□ -1.02
VPS53-217ENST00000575100 ZNF394Q53GI3 561 aa8.69□□□□□ -1.02
VPS53-217ENST00000575100 TYW1BQ6NUM6 668 aa8.69□□□□□ -1.02
VPS53-217ENST00000575100 IL17RAQ96F46 866 aa8.69□□□□□ -1.02
VPS53-217ENST00000575100 PLSCR1O15162 318 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 CBLBQ13191 982 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 PSMD2Q13200 908 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 ZNF654Q8IZM8 581 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 PTCD2Q8WV60 388 aaKnown RBP8.68□□□□□ -1.02
VPS53-217ENST00000575100 RELTQ969Z4 430 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 SLC39A13Q96H72 371 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 YTHDC1Q96MU7 727 aaKnown RBP8.68□□□□□ -1.02
VPS53-217ENST00000575100 PRKD2Q9BZL6 878 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 SPON1Q9HCB6 807 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 PCDHGB7Q9Y5F8 929 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 KCNQ2O43526 872 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 KIF4AO95239 1232 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 USP46P62068 366 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 KCNH2Q12809 1159 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 VPS37DQ86XT2 251 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 PHF12Q96QT6 1004 aa8.68□□□□□ -1.02
VPS53-217ENST00000575100 NFAT5O94916 1531 aa8.67□□□□□ -1.02
VPS53-217ENST00000575100 NHSQ6T4R5 1651 aa8.67□□□□□ -1.02
VPS53-217ENST00000575100 TTC21AQ8NDW8 1320 aa8.67□□□□□ -1.02
VPS53-217ENST00000575100 RGS20O76081 388 aa8.67□□□□□ -1.02
VPS53-217ENST00000575100 MTHFSP49914 203 aa8.67□□□□□ -1.02
VPS53-217ENST00000575100 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.67□□□□□ -1.02
VPS53-217ENST00000575100 WDR17Q8IZU2 1322 aa8.67□□□□□ -1.02
VPS53-217ENST00000575100 ZBBXA8MT70 800 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 NPR3P17342 541 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 RRS1Q15050 365 aaKnown RBP8.66□□□□□ -1.02
VPS53-217ENST00000575100 SIX5Q8N196 739 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 COG3Q96JB2 828 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 EYA1Q99502 592 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 TCEAL9Q9UHQ7 104 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 TRPC6Q9Y210 931 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 SENP3-EIF4A1A0A087X0R7 540 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 TNFRSF10BO14763 440 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 GIGYF1O75420 1035 aaPredicted RBP8.66□□□□□ -1.02
VPS53-217ENST00000575100 ATF4P18848 351 aaPredicted RBP8.66□□□□□ -1.02
VPS53-217ENST00000575100 YY1P25490 414 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 GJA8P48165 433 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 GUCA2AQ02747 115 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 AMOTL1Q8IY63 956 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 SRA1Q9HD15 236 aaKnown RBP8.66□□□□□ -1.02
VPS53-217ENST00000575100 CYLDQ9NQC7 956 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 POLKQ9UBT6 870 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 PAPPAQ13219 1627 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 USP31Q70CQ4 1352 aa8.66□□□□□ -1.02
VPS53-217ENST00000575100 IGHA2P01877 340 aa8.65□□□□□ -1.02
VPS53-217ENST00000575100 OS9Q13438 667 aaPredicted RBP8.65□□□□□ -1.02
VPS53-217ENST00000575100 DDB1Q16531 1140 aa8.65□□□□□ -1.02
VPS53-217ENST00000575100 CAPN12Q6ZSI9 719 aa8.65□□□□□ -1.02
VPS53-217ENST00000575100 CKAP2LQ8IYA6 745 aa8.65□□□□□ -1.02
VPS53-217ENST00000575100 PRPF38AQ8NAV1 312 aaKnown RBP8.65□□□□□ -1.02
VPS53-217ENST00000575100 PLPP7Q8NBV4 271 aa8.65□□□□□ -1.02
VPS53-217ENST00000575100 DNAAF2Q9NVR5 837 aaKnown RBP8.65□□□□□ -1.02
VPS53-217ENST00000575100 QSER1Q2KHR3 1735 aa8.65□□□□□ -1.03
VPS53-217ENST00000575100 CHD4Q14839 1912 aa8.65□□□□□ -1.03
VPS53-217ENST00000575100 MAPK8P45983 427 aa8.64□□□□□ -1.03
VPS53-217ENST00000575100 EHHADHQ08426 723 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms