RNA–Protein interactions for RNA: ENST00000560897.1

HERC1-210, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase family member 1, humanhuman

TSL 5

Gene HERC1, Length 539 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC1-210ENST00000560897 CNGB1Q14028 1251 aaPredicted RBP12.59□□□□□ -0.39
HERC1-210ENST00000560897 LDLRAD1Q5T700 205 aa12.59□□□□□ -0.39
HERC1-210ENST00000560897 FBXW7Q969H0 707 aa12.59□□□□□ -0.39
HERC1-210ENST00000560897 THUMPD2Q9BTF0 503 aaKnown RBP12.59□□□□□ -0.39
HERC1-210ENST00000560897 WTIPA6NIX2 430 aaPredicted RBP12.58□□□□□ -0.4
HERC1-210ENST00000560897 WNT10BO00744 389 aa12.58□□□□□ -0.4
HERC1-210ENST00000560897 EIF2S2P20042 333 aaKnown RBP12.58□□□□□ -0.4
HERC1-210ENST00000560897 NKX2-3Q8TAU0 364 aa12.58□□□□□ -0.4
HERC1-210ENST00000560897 PODXL2Q9NZ53 605 aa12.58□□□□□ -0.4
HERC1-210ENST00000560897 WDHD1O75717 1129 aaPredicted RBP12.57□□□□□ -0.4
HERC1-210ENST00000560897 SASH1O94885 1247 aa12.57□□□□□ -0.4
HERC1-210ENST00000560897 RPS8P62241 208 aaKnown RBP12.57□□□□□ -0.4
HERC1-210ENST00000560897 AIMP1Q12904 312 aaKnown RBP12.57□□□□□ -0.4
HERC1-210ENST00000560897 KIF22Q14807 665 aa12.57□□□□□ -0.4
HERC1-210ENST00000560897 SF3B3Q15393 1217 aaKnown RBP12.57□□□□□ -0.4
HERC1-210ENST00000560897 PODNQ7Z5L7 613 aa12.57□□□□□ -0.4
HERC1-210ENST00000560897 SH3TC2Q8TF17 1288 aa12.57□□□□□ -0.4
HERC1-210ENST00000560897 LRCH3Q96II8 777 aa12.57□□□□□ -0.4
HERC1-210ENST00000560897 GMLQ99445 158 aa12.57□□□□□ -0.4
HERC1-210ENST00000560897 COL25A1Q9BXS0 654 aaPredicted RBP12.57□□□□□ -0.4
HERC1-210ENST00000560897 MYO3BQ8WXR4 1341 aa12.57□□□□□ -0.4
HERC1-210ENST00000560897 LAMB1P07942 1786 aa12.56□□□□□ -0.4
HERC1-210ENST00000560897 PRO3102Q9H379 93 aa12.56□□□□□ -0.4
HERC1-210ENST00000560897 ZFYVE28Q9HCC9 887 aa12.56□□□□□ -0.4
HERC1-210ENST00000560897 TIMELESSQ9UNS1 1208 aa12.56□□□□□ -0.4
HERC1-210ENST00000560897 COL1A1P02452 1464 aaPredicted RBP12.56□□□□□ -0.4
HERC1-210ENST00000560897 SOX1O00570 391 aaPredicted RBP12.55□□□□□ -0.4
HERC1-210ENST00000560897 IREB2P48200 963 aaKnown RBP12.55□□□□□ -0.4
HERC1-210ENST00000560897 MMP14P50281 582 aa12.55□□□□□ -0.4
HERC1-210ENST00000560897 TAF1CQ15572 869 aaPredicted RBP12.55□□□□□ -0.4
HERC1-210ENST00000560897 COPS6Q7L5N1 327 aa12.55□□□□□ -0.4
HERC1-210ENST00000560897 ZNF428Q96B54 188 aa12.55□□□□□ -0.4
HERC1-210ENST00000560897 CLMNQ96JQ2 1002 aa12.55□□□□□ -0.4
HERC1-210ENST00000560897 FZD1Q9UP38 647 aa12.55□□□□□ -0.4
HERC1-210ENST00000560897 UNCXA6NJT0 531 aa12.54□□□□□ -0.4
HERC1-210ENST00000560897 ZBTB7BO15156 539 aaPredicted RBP12.54□□□□□ -0.4
HERC1-210ENST00000560897 ANXA1P04083 346 aa12.54□□□□□ -0.4
HERC1-210ENST00000560897 MAP3K11Q16584 847 aa12.54□□□□□ -0.4
HERC1-210ENST00000560897 DEFB123Q8N688 67 aa12.54□□□□□ -0.4
HERC1-210ENST00000560897 XAGE3Q8WTP9 111 aa12.54□□□□□ -0.4
HERC1-210ENST00000560897 FAM89AQ96GI7 184 aa12.54□□□□□ -0.4
HERC1-210ENST00000560897 STXBP5LQ9Y2K9 1186 aa12.54□□□□□ -0.4
HERC1-210ENST00000560897 HSP90B1P14625 803 aaKnown RBP12.53□□□□□ -0.4
HERC1-210ENST00000560897 GPR153Q6NV75 609 aa12.53□□□□□ -0.4
HERC1-210ENST00000560897 DEFB129Q9H1M3 183 aa12.53□□□□□ -0.4
HERC1-210ENST00000560897 XDHP47989 1333 aa12.53□□□□□ -0.4
HERC1-210ENST00000560897 ZNF646O15015 1829 aaPredicted RBP12.53□□□□□ -0.4
HERC1-210ENST00000560897 LAMA3Q16787 3333 aa12.52□□□□□ -0.4
HERC1-210ENST00000560897 EVI5O60447 810 aa12.52□□□□□ -0.41
HERC1-210ENST00000560897 GNRH1P01148 92 aa12.52□□□□□ -0.41
HERC1-210ENST00000560897 ATP2B4P23634 1241 aa12.52□□□□□ -0.41
HERC1-210ENST00000560897 PRMT2P55345 433 aa12.52□□□□□ -0.41
HERC1-210ENST00000560897 CAP1Q01518 475 aa12.52□□□□□ -0.41
HERC1-210ENST00000560897 PDIA6Q15084 440 aa12.52□□□□□ -0.41
HERC1-210ENST00000560897 PROSER3Q2NL68 480 aa12.52□□□□□ -0.41
HERC1-210ENST00000560897 SUPT20HL1Q3ZLR7 823 aa12.52□□□□□ -0.41
HERC1-210ENST00000560897 RTL5Q5HYW3 569 aaPredicted RBP12.52□□□□□ -0.41
HERC1-210ENST00000560897 LRP10Q7Z4F1 713 aa12.52□□□□□ -0.41
HERC1-210ENST00000560897 SHISA4Q96DD7 197 aa12.52□□□□□ -0.41
HERC1-210ENST00000560897 PPP2R3BQ9Y5P8 575 aa12.52□□□□□ -0.41
HERC1-210ENST00000560897 DLG5Q8TDM6 1919 aa12.51□□□□□ -0.41
HERC1-210ENST00000560897 TESPA1A2RU30 521 aaPredicted RBP12.51□□□□□ -0.41
HERC1-210ENST00000560897 IRS4O14654 1257 aaPredicted RBP12.51□□□□□ -0.41
HERC1-210ENST00000560897 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.51□□□□□ -0.41
HERC1-210ENST00000560897 ANKRD13AQ8IZ07 590 aa12.51□□□□□ -0.41
HERC1-210ENST00000560897 PTPN18Q99952 460 aa12.51□□□□□ -0.41
HERC1-210ENST00000560897 MXD3Q9BW11 206 aa12.51□□□□□ -0.41
HERC1-210ENST00000560897 TSPYL4Q9UJ04 414 aa12.51□□□□□ -0.41
HERC1-210ENST00000560897 COL4A1P02462 1669 aa12.51□□□□□ -0.41
HERC1-210ENST00000560897 MYO1BO43795 1136 aa12.5□□□□□ -0.41
HERC1-210ENST00000560897 FARP2O94887 1054 aaPredicted RBP12.5□□□□□ -0.41
HERC1-210ENST00000560897 MTFR1Q15390 333 aa12.5□□□□□ -0.41
HERC1-210ENST00000560897 DACT2Q5SW24 774 aa12.5□□□□□ -0.41
HERC1-210ENST00000560897 STRIP1Q5VSL9 837 aa12.5□□□□□ -0.41
HERC1-210ENST00000560897 BIN2Q9UBW5 565 aaPredicted RBP12.5□□□□□ -0.41
HERC1-210ENST00000560897 MED23Q9ULK4 1368 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 CCL15-CCL14A0A0B4J2E2 113 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 GJA8P48165 433 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 UBXN2AP68543 259 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 DLGAP5Q15398 846 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 CCL15Q16663 113 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 CCDC152Q4G0S7 254 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 KIAA0825Q8IV33 1275 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 ANKRD18AQ8IVF6 992 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 RAET1EQ8TD07 263 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 OPTNQ96CV9 577 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 SEC31BQ9NQW1 1179 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 STAP2Q9UGK3 403 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 UNC80Q8N2C7 3258 aa12.49□□□□□ -0.41
HERC1-210ENST00000560897 ATP5J2-PTCD1G3V325 749 aa12.48□□□□□ -0.41
HERC1-210ENST00000560897 PER1O15534 1290 aaPredicted RBP12.48□□□□□ -0.41
HERC1-210ENST00000560897 GJB1P08034 283 aa12.48□□□□□ -0.41
HERC1-210ENST00000560897 HOXD10P28358 340 aa12.48□□□□□ -0.41
HERC1-210ENST00000560897 GJA5P36382 358 aa12.48□□□□□ -0.41
HERC1-210ENST00000560897 GTF2A2P52657 109 aa12.48□□□□□ -0.41
HERC1-210ENST00000560897 LACTBP83111 547 aaPredicted RBP12.48□□□□□ -0.41
HERC1-210ENST00000560897 Q7L0L9 218 aa12.48□□□□□ -0.41
HERC1-210ENST00000560897 RNF208Q9H0X6 261 aa12.48□□□□□ -0.41
HERC1-210ENST00000560897 ELP3Q9H9T3 547 aa12.48□□□□□ -0.41
HERC1-210ENST00000560897 SSC5DA1L4H1 1573 aa12.47□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms