RNA–Protein interactions for RNA: ENST00000559347.1

SPG11-216, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 5

Gene SPG11, Length 716 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-216ENST00000559347 ZBED9Q6R2W3 1325 aa13.8□□□□□ -0.2
SPG11-216ENST00000559347 IRS2Q9Y4H2 1338 aa13.8□□□□□ -0.2
SPG11-216ENST00000559347 VIL1P09327 827 aaKnown RBP13.79□□□□□ -0.2
SPG11-216ENST00000559347 TAF7LQ5H9L4 462 aa13.79□□□□□ -0.2
SPG11-216ENST00000559347 PODNQ7Z5L7 613 aa13.79□□□□□ -0.2
SPG11-216ENST00000559347 TXNRD3Q86VQ6 643 aa13.79□□□□□ -0.2
SPG11-216ENST00000559347 H7C1D1 291 aa13.78□□□□□ -0.2
SPG11-216ENST00000559347 EGFRP00533 1210 aa13.78□□□□□ -0.2
SPG11-216ENST00000559347 HIRAP54198 1017 aaPredicted RBP13.78□□□□□ -0.2
SPG11-216ENST00000559347 CACNB1Q02641 598 aaPredicted RBP13.78□□□□□ -0.2
SPG11-216ENST00000559347 RSBN1LQ6PCB5 846 aaPredicted RBP13.78□□□□□ -0.2
SPG11-216ENST00000559347 LDHAL6AQ6ZMR3 332 aa13.78□□□□□ -0.2
SPG11-216ENST00000559347 API5Q9BZZ5 524 aaKnown RBP13.78□□□□□ -0.2
SPG11-216ENST00000559347 COA1Q9GZY4 146 aa13.78□□□□□ -0.2
SPG11-216ENST00000559347 TMEM88BA6NKF7 163 aa13.77□□□□□ -0.21
SPG11-216ENST00000559347 SNAP23O00161 211 aa13.77□□□□□ -0.21
SPG11-216ENST00000559347 TAF5LO75529 589 aa13.77□□□□□ -0.21
SPG11-216ENST00000559347 KCNJ4P48050 445 aa13.77□□□□□ -0.21
SPG11-216ENST00000559347 C15orf52Q6ZUT6 534 aaKnown RBP13.77□□□□□ -0.21
SPG11-216ENST00000559347 JMYQ8N9B5 988 aa13.77□□□□□ -0.21
SPG11-216ENST00000559347 AGBL3Q8NEM8 1001 aa13.77□□□□□ -0.21
SPG11-216ENST00000559347 HELBQ8NG08 1087 aaPredicted RBP13.77□□□□□ -0.21
SPG11-216ENST00000559347 CNNM1Q9NRU3 951 aa13.77□□□□□ -0.21
SPG11-216ENST00000559347 PGAP2Q9UHJ9 254 aa13.77□□□□□ -0.21
SPG11-216ENST00000559347 CNTNAP1P78357 1384 aa13.76□□□□□ -0.21
SPG11-216ENST00000559347 USP17L3A6NCW0 530 aa13.76□□□□□ -0.21
SPG11-216ENST00000559347 USP17L4A6NCW7 530 aa13.76□□□□□ -0.21
SPG11-216ENST00000559347 FMR1Q06787 632 aaKnown RBP eCLIP13.76□□□□□ -0.21
SPG11-216ENST00000559347 TBC1D10BQ4KMP7 808 aaPredicted RBP13.76□□□□□ -0.21
SPG11-216ENST00000559347 DACT2Q5SW24 774 aa13.76□□□□□ -0.21
SPG11-216ENST00000559347 USP17L1Q7RTZ2 530 aa13.76□□□□□ -0.21
SPG11-216ENST00000559347 SAMD7Q7Z3H4 446 aa13.76□□□□□ -0.21
SPG11-216ENST00000559347 ZC3H15Q8WU90 426 aaKnown RBP13.76□□□□□ -0.21
SPG11-216ENST00000559347 ARHGAP45Q92619 1136 aa13.76□□□□□ -0.21
SPG11-216ENST00000559347 GMLQ99445 158 aa13.76□□□□□ -0.21
SPG11-216ENST00000559347 PUS3Q9BZE2 481 aaKnown RBP13.76□□□□□ -0.21
SPG11-216ENST00000559347 MYO3BQ8WXR4 1341 aa13.75□□□□□ -0.21
SPG11-216ENST00000559347 TRAF5O00463 557 aa13.75□□□□□ -0.21
SPG11-216ENST00000559347 ZNF280AP59817 542 aaPredicted RBP13.75□□□□□ -0.21
SPG11-216ENST00000559347 KIF4BQ2VIQ3 1234 aa13.75□□□□□ -0.21
SPG11-216ENST00000559347 BCAR3O75815 825 aa13.74□□□□□ -0.21
SPG11-216ENST00000559347 UBTFL1P0CB47 393 aaPredicted RBP13.74□□□□□ -0.21
SPG11-216ENST00000559347 TRIM27P14373 513 aa13.74□□□□□ -0.21
SPG11-216ENST00000559347 C1QBPQ07021 282 aaKnown RBP13.74□□□□□ -0.21
SPG11-216ENST00000559347 STRIP1Q5VSL9 837 aa13.74□□□□□ -0.21
SPG11-216ENST00000559347 GLIS2Q9BZE0 524 aaPredicted RBP13.74□□□□□ -0.21
SPG11-216ENST00000559347 MKRN1Q9UHC7 482 aaKnown RBP13.74□□□□□ -0.21
SPG11-216ENST00000559347 RIPOR2Q9Y4F9 1068 aa13.74□□□□□ -0.21
SPG11-216ENST00000559347 MROH5Q6ZUA9 1318 aa13.73□□□□□ -0.21
SPG11-216ENST00000559347 PLIN1O60240 522 aa13.73□□□□□ -0.21
SPG11-216ENST00000559347 LRRC24Q50LG9 513 aa13.73□□□□□ -0.21
SPG11-216ENST00000559347 INTS3Q68E01 1043 aaKnown RBP13.73□□□□□ -0.21
SPG11-216ENST00000559347 ZNF804AQ7Z570 1209 aa13.73□□□□□ -0.21
SPG11-216ENST00000559347 KLHDC4Q8TBB5 520 aa13.73□□□□□ -0.21
SPG11-216ENST00000559347 FBXW7Q969H0 707 aa13.73□□□□□ -0.21
SPG11-216ENST00000559347 MEIS3Q99687 375 aa13.73□□□□□ -0.21
SPG11-216ENST00000559347 MXD3Q9BW11 206 aa13.73□□□□□ -0.21
SPG11-216ENST00000559347 CD209Q9NNX6 404 aa13.73□□□□□ -0.21
SPG11-216ENST00000559347 TNNQ9UQP3 1299 aa13.73□□□□□ -0.21
SPG11-216ENST00000559347 USP17L8P0C7I0 530 aa13.72□□□□□ -0.21
SPG11-216ENST00000559347 IL1R1P14778 569 aa13.72□□□□□ -0.21
SPG11-216ENST00000559347 RFX5P48382 616 aaPredicted RBP13.72□□□□□ -0.21
SPG11-216ENST00000559347 UBE4AQ14139 1066 aa13.72□□□□□ -0.21
SPG11-216ENST00000559347 ATF7IPQ6VMQ6 1270 aa13.72□□□□□ -0.21
SPG11-216ENST00000559347 VGLL2Q8N8G2 317 aa13.72□□□□□ -0.21
SPG11-216ENST00000559347 MYOZ2Q9NPC6 264 aa13.72□□□□□ -0.21
SPG11-216ENST00000559347 GGA3Q9NZ52 723 aa13.72□□□□□ -0.21
SPG11-216ENST00000559347 ASTN2O75129 1339 aaPredicted RBP13.71□□□□□ -0.21
SPG11-216ENST00000559347 RASSF10A6NK89 507 aa13.71□□□□□ -0.21
SPG11-216ENST00000559347 IPO8O15397 1037 aaKnown RBP13.71□□□□□ -0.21
SPG11-216ENST00000559347 GTF2IP78347 998 aa13.71□□□□□ -0.21
SPG11-216ENST00000559347 RBM26Q5T8P6 1007 aaKnown RBP13.71□□□□□ -0.21
SPG11-216ENST00000559347 CST9Q5W186 159 aa13.71□□□□□ -0.21
SPG11-216ENST00000559347 TTLL5Q6EMB2 1281 aa13.71□□□□□ -0.21
SPG11-216ENST00000559347 CDC37L1Q7L3B6 337 aa13.71□□□□□ -0.21
SPG11-216ENST00000559347 FRAT1Q92837 279 aaPredicted RBP13.71□□□□□ -0.21
SPG11-216ENST00000559347 LRRFIP2Q9Y608 721 aaKnown RBP13.71□□□□□ -0.21
SPG11-216ENST00000559347 PAPPA2Q9BXP8 1791 aa13.71□□□□□ -0.22
SPG11-216ENST00000559347 PTPN12Q05209 780 aaKnown RBP13.7□□□□□ -0.22
SPG11-216ENST00000559347 METTL24Q5JXM2 366 aa13.7□□□□□ -0.22
SPG11-216ENST00000559347 PITPNM2Q9BZ72 1349 aa13.69□□□□□ -0.22
SPG11-216ENST00000559347 ADM5C9JUS6 153 aa13.69□□□□□ -0.22
SPG11-216ENST00000559347 CELF2O95319 508 aaKnown RBP13.69□□□□□ -0.22
SPG11-216ENST00000559347 ANGEL2Q5VTE6 544 aaKnown RBP13.69□□□□□ -0.22
SPG11-216ENST00000559347 ZKSCAN2Q63HK3 967 aa13.69□□□□□ -0.22
SPG11-216ENST00000559347 KRT26Q7Z3Y9 468 aa13.69□□□□□ -0.22
SPG11-216ENST00000559347 USP48Q86UV5 1035 aa13.69□□□□□ -0.22
SPG11-216ENST00000559347 CERS5Q8N5B7 392 aa13.69□□□□□ -0.22
SPG11-216ENST00000559347 CLUAP1Q96AJ1 413 aa13.69□□□□□ -0.22
SPG11-216ENST00000559347 DCPSQ96C86 337 aaKnown RBP13.69□□□□□ -0.22
SPG11-216ENST00000559347 ABT1Q9ULW3 272 aaKnown RBP13.69□□□□□ -0.22
SPG11-216ENST00000559347 TLL2Q9Y6L7 1015 aa13.69□□□□□ -0.22
SPG11-216ENST00000559347 EYA2O00167 538 aa13.68□□□□□ -0.22
SPG11-216ENST00000559347 PDE8BO95263 885 aa13.68□□□□□ -0.22
SPG11-216ENST00000559347 GNAI3P08754 354 aa13.68□□□□□ -0.22
SPG11-216ENST00000559347 GYG1P46976 350 aa13.68□□□□□ -0.22
SPG11-216ENST00000559347 VEGFBP49765 207 aa13.68□□□□□ -0.22
SPG11-216ENST00000559347 SCARF1Q14162 830 aa13.68□□□□□ -0.22
SPG11-216ENST00000559347 DLK2Q6UY11 383 aa13.68□□□□□ -0.22
SPG11-216ENST00000559347 ATG9AQ7Z3C6 839 aa13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms