RNA–Protein interactions for RNA: ENST00000556315.5

ATXN3-239, Transcript of ataxin 3, humanhuman

TSL 1 (best)

Gene ATXN3, Length 924 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATXN3-239ENST00000556315 NUCKS1Q9H1E3 243 aaKnown RBP7.04□□□□□ -1.28
ATXN3-239ENST00000556315 RAB6BQ9NRW1 208 aa7.04□□□□□ -1.28
ATXN3-239ENST00000556315 TULP4Q9NRJ4 1543 aa7.04□□□□□ -1.28
ATXN3-239ENST00000556315 ATP7BP35670 1465 aa7.04□□□□□ -1.28
ATXN3-239ENST00000556315 BCL9O00512 1426 aa7.03□□□□□ -1.28
ATXN3-239ENST00000556315 CRB1P82279 1406 aa7.03□□□□□ -1.28
ATXN3-239ENST00000556315 ZBTB7CA1YPR0 619 aa7.03□□□□□ -1.28
ATXN3-239ENST00000556315 MX2P20592 715 aa7.03□□□□□ -1.28
ATXN3-239ENST00000556315 GPAT2Q6NUI2 795 aa7.03□□□□□ -1.28
ATXN3-239ENST00000556315 CFHR5Q9BXR6 569 aa7.03□□□□□ -1.28
ATXN3-239ENST00000556315 AATKQ6ZMQ8 1374 aa7.03□□□□□ -1.28
ATXN3-239ENST00000556315 MAP3K5Q99683 1374 aa7.03□□□□□ -1.28
ATXN3-239ENST00000556315 ALS2Q96Q42 1657 aa7.03□□□□□ -1.28
ATXN3-239ENST00000556315 CNTNAP5Q8WYK1 1306 aa7.02□□□□□ -1.28
ATXN3-239ENST00000556315 ABCA3Q99758 1704 aa7.02□□□□□ -1.29
ATXN3-239ENST00000556315 TRPM3Q9HCF6 1732 aaPredicted RBP7.02□□□□□ -1.29
ATXN3-239ENST00000556315 PHF20L1A8MW92 1017 aa7.02□□□□□ -1.29
ATXN3-239ENST00000556315 PHTF2Q8N3S3 785 aa7.02□□□□□ -1.29
ATXN3-239ENST00000556315 CARD10Q9BWT7 1032 aa7.02□□□□□ -1.29
ATXN3-239ENST00000556315 BRD4O60885 1362 aaPredicted RBP7.02□□□□□ -1.29
ATXN3-239ENST00000556315 WDR17Q8IZU2 1322 aa7.01□□□□□ -1.29
ATXN3-239ENST00000556315 RGPD8O14715 1765 aaPredicted RBP7.01□□□□□ -1.29
ATXN3-239ENST00000556315 RREB1Q92766 1687 aa7.01□□□□□ -1.29
ATXN3-239ENST00000556315 COL5A2P05997 1499 aaPredicted RBP7.01□□□□□ -1.29
ATXN3-239ENST00000556315 GRIN3BO60391 1043 aa7.01□□□□□ -1.29
ATXN3-239ENST00000556315 MYCP01106 439 aaPredicted RBP7.01□□□□□ -1.29
ATXN3-239ENST00000556315 CSB-PGBD3P0DP91 1061 aa7.01□□□□□ -1.29
ATXN3-239ENST00000556315 POLD1P28340 1107 aa7.01□□□□□ -1.29
ATXN3-239ENST00000556315 IRF5Q13568 498 aa7.01□□□□□ -1.29
ATXN3-239ENST00000556315 UBAP2LQ14157 1087 aaKnown RBP7.01□□□□□ -1.29
ATXN3-239ENST00000556315 BEND7Q8N7W2 519 aaPredicted RBP7.01□□□□□ -1.29
ATXN3-239ENST00000556315 ZSCAN10Q96SZ4 725 aaPredicted RBP7.01□□□□□ -1.29
ATXN3-239ENST00000556315 NSFL1CQ9UNZ2 370 aaKnown RBP7.01□□□□□ -1.29
ATXN3-239ENST00000556315 ADGRB1O14514 1584 aa7□□□□□ -1.29
ATXN3-239ENST00000556315 A0A1B0GTH6 734 aa7□□□□□ -1.29
ATXN3-239ENST00000556315 OIP5O43482 229 aa7□□□□□ -1.29
ATXN3-239ENST00000556315 MAP2K3P46734 347 aa7□□□□□ -1.29
ATXN3-239ENST00000556315 SRPK2P78362 688 aaKnown RBP7□□□□□ -1.29
ATXN3-239ENST00000556315 LBRQ14739 615 aaKnown RBP7□□□□□ -1.29
ATXN3-239ENST00000556315 NEDD1Q8NHV4 660 aa7□□□□□ -1.29
ATXN3-239ENST00000556315 DCAF5Q96JK2 942 aa7□□□□□ -1.29
ATXN3-239ENST00000556315 NUP188Q5SRE5 1749 aa7□□□□□ -1.29
ATXN3-239ENST00000556315 IFT172Q9UG01 1749 aa7□□□□□ -1.29
ATXN3-239ENST00000556315 NRKQ7Z2Y5 1582 aa6.99□□□□□ -1.29
ATXN3-239ENST00000556315 TSGA10IPQ3SY00 556 aa6.99□□□□□ -1.29
ATXN3-239ENST00000556315 ARHGEF25Q86VW2 580 aa6.99□□□□□ -1.29
ATXN3-239ENST00000556315 KCNH5Q8NCM2 988 aa6.99□□□□□ -1.29
ATXN3-239ENST00000556315 CABP1Q9NZU7 370 aa6.99□□□□□ -1.29
ATXN3-239ENST00000556315 ITGB2P05107 769 aa6.98□□□□□ -1.29
ATXN3-239ENST00000556315 SOX11P35716 441 aa6.98□□□□□ -1.29
ATXN3-239ENST00000556315 PHKA2P46019 1235 aa6.98□□□□□ -1.29
ATXN3-239ENST00000556315 EIF4G2P78344 907 aaKnown RBP eCLIP6.98□□□□□ -1.29
ATXN3-239ENST00000556315 VAC14Q08AM6 782 aa6.98□□□□□ -1.29
ATXN3-239ENST00000556315 USP4Q13107 963 aa6.98□□□□□ -1.29
ATXN3-239ENST00000556315 PLA2G4EQ3MJ16 856 aa6.98□□□□□ -1.29
ATXN3-239ENST00000556315 C4orf17Q53FE4 359 aa6.98□□□□□ -1.29
ATXN3-239ENST00000556315 GNASQ5JWF2 1037 aa6.98□□□□□ -1.29
ATXN3-239ENST00000556315 ACSBG1Q96GR2 724 aa6.98□□□□□ -1.29
ATXN3-239ENST00000556315 OXCT2Q9BYC2 517 aaPredicted RBP6.98□□□□□ -1.29
ATXN3-239ENST00000556315 GPAMQ9HCL2 828 aa6.98□□□□□ -1.29
ATXN3-239ENST00000556315 HSPA6P17066 643 aa6.97□□□□□ -1.29
ATXN3-239ENST00000556315 ZNF827Q17R98 1081 aa6.97□□□□□ -1.29
ATXN3-239ENST00000556315 PODNQ7Z5L7 613 aa6.97□□□□□ -1.29
ATXN3-239ENST00000556315 KLRG1Q96E93 195 aa6.97□□□□□ -1.29
ATXN3-239ENST00000556315 ETNK1Q9HBU6 452 aa6.97□□□□□ -1.29
ATXN3-239ENST00000556315 DOLKQ9UPQ8 538 aa6.97□□□□□ -1.29
ATXN3-239ENST00000556315 PHF24Q9UPV7 400 aa6.97□□□□□ -1.29
ATXN3-239ENST00000556315 CCDC7Q96M83 1385 aa6.96□□□□□ -1.29
ATXN3-239ENST00000556315 MSX1P28360 303 aa6.96□□□□□ -1.3
ATXN3-239ENST00000556315 TMEM214Q6NUQ4 689 aaKnown RBP6.96□□□□□ -1.3
ATXN3-239ENST00000556315 C1orf229Q6ZS94 237 aaPredicted RBP6.96□□□□□ -1.3
ATXN3-239ENST00000556315 RHBDD1Q8TEB9 315 aa6.96□□□□□ -1.3
ATXN3-239ENST00000556315 NDFIP2Q9NV92 336 aa6.96□□□□□ -1.3
ATXN3-239ENST00000556315 TFCP2L1Q9NZI6 479 aa6.96□□□□□ -1.3
ATXN3-239ENST00000556315 UTRNP46939 3433 aa6.96□□□□□ -1.3
ATXN3-239ENST00000556315 CRYBG1Q9Y4K1 1723 aa6.96□□□□□ -1.3
ATXN3-239ENST00000556315 CASZ1Q86V15 1759 aa6.95□□□□□ -1.3
ATXN3-239ENST00000556315 USP6P35125 1406 aa6.95□□□□□ -1.3
ATXN3-239ENST00000556315 PPIP5K1Q6PFW1 1433 aa6.95□□□□□ -1.3
ATXN3-239ENST00000556315 IL2RBP14784 551 aa6.95□□□□□ -1.3
ATXN3-239ENST00000556315 YBX3P16989 372 aaKnown RBP eCLIP6.95□□□□□ -1.3
ATXN3-239ENST00000556315 GTF2E1P29083 439 aaPredicted RBP6.95□□□□□ -1.3
ATXN3-239ENST00000556315 SLFNL1Q499Z3 407 aa6.95□□□□□ -1.3
ATXN3-239ENST00000556315 NLGN2Q8NFZ4 835 aa6.95□□□□□ -1.3
ATXN3-239ENST00000556315 CRISPLD1Q9H336 500 aa6.95□□□□□ -1.3
ATXN3-239ENST00000556315 NLRP2Q9NX02 1062 aa6.95□□□□□ -1.3
ATXN3-239ENST00000556315 GDF2Q9UK05 429 aaPredicted RBP6.95□□□□□ -1.3
ATXN3-239ENST00000556315 LMO7Q8WWI1 1683 aa6.95□□□□□ -1.3
ATXN3-239ENST00000556315 PARP4Q9UKK3 1724 aaKnown RBP6.95□□□□□ -1.3
ATXN3-239ENST00000556315 TTC21BQ7Z4L5 1316 aa6.95□□□□□ -1.3
ATXN3-239ENST00000556315 CENPJQ9HC77 1338 aaPredicted RBP6.95□□□□□ -1.3
ATXN3-239ENST00000556315 MYOM1P52179 1685 aa6.94□□□□□ -1.3
ATXN3-239ENST00000556315 PEAK1Q9H792 1746 aa6.94□□□□□ -1.3
ATXN3-239ENST00000556315 POM121CA8CG34 1229 aa6.94□□□□□ -1.3
ATXN3-239ENST00000556315 SHISA8B8ZZ34 492 aa6.94□□□□□ -1.3
ATXN3-239ENST00000556315 MSTNO14793 375 aa6.94□□□□□ -1.3
ATXN3-239ENST00000556315 STAU1O95793 577 aaKnown RBP6.94□□□□□ -1.3
ATXN3-239ENST00000556315 SEMA3FQ13275 785 aa6.94□□□□□ -1.3
ATXN3-239ENST00000556315 NBPF1Q3BBV0 1214 aa6.94□□□□□ -1.3
ATXN3-239ENST00000556315 RNF135Q8IUD6 432 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms