RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 HELLSQ9NRZ9 838 aa17.69■□□□□ 0.42
VPS33B-205ENST00000556096 RBM8AQ9Y5S9 174 aaKnown RBP17.69■□□□□ 0.42
VPS33B-205ENST00000556096 TAF5LO75529 589 aa17.68■□□□□ 0.42
VPS33B-205ENST00000556096 MTFR1LQ9H019 292 aa17.68■□□□□ 0.42
VPS33B-205ENST00000556096 NFIXQ14938 502 aa17.67■□□□□ 0.42
VPS33B-205ENST00000556096 ZNF589Q86UQ0 364 aaPredicted RBP17.67■□□□□ 0.42
VPS33B-205ENST00000556096 RNF113AO15541 343 aaKnown RBP17.67■□□□□ 0.42
VPS33B-205ENST00000556096 ZKSCAN1P17029 563 aaPredicted RBP17.67■□□□□ 0.42
VPS33B-205ENST00000556096 GTF2E1P29083 439 aaPredicted RBP17.67■□□□□ 0.42
VPS33B-205ENST00000556096 ZMYM1Q5SVZ6 1142 aa17.67■□□□□ 0.42
VPS33B-205ENST00000556096 CREB3L3Q68CJ9 461 aa17.67■□□□□ 0.42
VPS33B-205ENST00000556096 PRPF40BQ6NWY9 871 aaKnown RBP17.67■□□□□ 0.42
VPS33B-205ENST00000556096 TPTE2Q6XPS3 522 aa17.67■□□□□ 0.42
VPS33B-205ENST00000556096 ZFYP08048 801 aaPredicted RBP17.66■□□□□ 0.42
VPS33B-205ENST00000556096 MMP10P09238 476 aa17.66■□□□□ 0.42
VPS33B-205ENST00000556096 UQCRFS1P1P0C7P4 283 aa17.66■□□□□ 0.42
VPS33B-205ENST00000556096 SLC5A1P13866 664 aa17.66■□□□□ 0.42
VPS33B-205ENST00000556096 KCNJ4P48050 445 aa17.66■□□□□ 0.42
VPS33B-205ENST00000556096 FKBP4Q02790 459 aaKnown RBP eCLIP17.66■□□□□ 0.42
VPS33B-205ENST00000556096 RNF20Q5VTR2 975 aa17.66■□□□□ 0.42
VPS33B-205ENST00000556096 SLC16A10Q8TF71 515 aa17.66■□□□□ 0.42
VPS33B-205ENST00000556096 CWC22Q9HCG8 908 aaKnown RBP17.66■□□□□ 0.42
VPS33B-205ENST00000556096 ARAP2Q8WZ64 1704 aa17.66■□□□□ 0.42
VPS33B-205ENST00000556096 CARMIL3Q8ND23 1372 aa17.66■□□□□ 0.42
VPS33B-205ENST00000556096 ARID4AP29374 1257 aaPredicted RBP17.65■□□□□ 0.42
VPS33B-205ENST00000556096 SCARF1Q14162 830 aa17.65■□□□□ 0.42
VPS33B-205ENST00000556096 TSGA10IPQ3SY00 556 aa17.65■□□□□ 0.42
VPS33B-205ENST00000556096 NBPF5PQ86XG9 351 aaPredicted RBP17.65■□□□□ 0.42
VPS33B-205ENST00000556096 TTC14Q96N46 770 aa17.65■□□□□ 0.42
VPS33B-205ENST00000556096 UPF3BQ9BZI7 483 aaKnown RBP17.65■□□□□ 0.42
VPS33B-205ENST00000556096 HMG20BQ9P0W2 317 aa17.65■□□□□ 0.42
VPS33B-205ENST00000556096 TNRC6CQ9HCJ0 1690 aaKnown RBP17.65■□□□□ 0.42
VPS33B-205ENST00000556096 SLC27A2O14975 620 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 ZAP70P43403 619 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 DDR1Q08345 913 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 CUL4AQ13619 759 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 CCDC102BQ68D86 513 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 ANKRD18AQ8IVF6 992 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 NLGN1Q8N2Q7 840 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 TMX3Q96JJ7 454 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 ZSWIM6Q9HCJ5 1215 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 FRAT2O75474 233 aaPredicted RBP17.64■□□□□ 0.41
VPS33B-205ENST00000556096 PTGER2P43116 358 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 MCAMP43121 646 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 C3orf67Q6ZVT6 689 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 CCDC24Q8N4L8 307 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 HELBQ8NG08 1087 aaPredicted RBP17.64■□□□□ 0.41
VPS33B-205ENST00000556096 NLRP3Q96P20 1036 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 SEC62Q99442 399 aaKnown RBP17.64■□□□□ 0.41
VPS33B-205ENST00000556096 SPON1Q9HCB6 807 aa17.64■□□□□ 0.41
VPS33B-205ENST00000556096 U3KPZ7 1027 aaPredicted RBP17.64■□□□□ 0.41
VPS33B-205ENST00000556096 SRCAPQ6ZRS2 3230 aa17.63■□□□□ 0.41
VPS33B-205ENST00000556096 TM4SF1P30408 202 aa17.63■□□□□ 0.41
VPS33B-205ENST00000556096 TTF1Q15361 905 aaPredicted RBP17.63■□□□□ 0.41
VPS33B-205ENST00000556096 FOXD4L1Q9NU39 408 aa17.63■□□□□ 0.41
VPS33B-205ENST00000556096 BSDC1Q9NW68 430 aaPredicted RBP17.63■□□□□ 0.41
VPS33B-205ENST00000556096 AKAP11Q9UKA4 1901 aa17.62■□□□□ 0.41
VPS33B-205ENST00000556096 CHGBP05060 677 aa17.62■□□□□ 0.41
VPS33B-205ENST00000556096 PSMA5P28066 241 aa17.62■□□□□ 0.41
VPS33B-205ENST00000556096 CHRNDQ07001 517 aa17.62■□□□□ 0.41
VPS33B-205ENST00000556096 RAB3GAP1Q15042 981 aa17.62■□□□□ 0.41
VPS33B-205ENST00000556096 KLHL34Q8N239 644 aa17.62■□□□□ 0.41
VPS33B-205ENST00000556096 INTS4Q96HW7 963 aaKnown RBP17.62■□□□□ 0.41
VPS33B-205ENST00000556096 JAKMIP1Q96N16 626 aaKnown RBP17.62■□□□□ 0.41
VPS33B-205ENST00000556096 DSCC1Q9BVC3 393 aa17.62■□□□□ 0.41
VPS33B-205ENST00000556096 TAF1P21675 1872 aa17.62■□□□□ 0.41
VPS33B-205ENST00000556096 RPAP1Q9BWH6 1393 aaPredicted RBP17.61■□□□□ 0.41
VPS33B-205ENST00000556096 CASTP20810 708 aaKnown RBP17.61■□□□□ 0.41
VPS33B-205ENST00000556096 PHKA1P46020 1223 aa17.61■□□□□ 0.41
VPS33B-205ENST00000556096 ADCK5Q3MIX3 580 aa17.61■□□□□ 0.41
VPS33B-205ENST00000556096 VPS53Q5VIR6 699 aa17.61■□□□□ 0.41
VPS33B-205ENST00000556096 CCDC129Q6ZRS4 1044 aa17.61■□□□□ 0.41
VPS33B-205ENST00000556096 SGIP1Q9BQI5 828 aa17.61■□□□□ 0.41
VPS33B-205ENST00000556096 CYP46A1Q9Y6A2 500 aa17.61■□□□□ 0.41
VPS33B-205ENST00000556096 NRXN2Q9P2S2 1712 aa17.61■□□□□ 0.41
VPS33B-205ENST00000556096 POLRMTO00411 1230 aaKnown RBP17.61■□□□□ 0.41
VPS33B-205ENST00000556096 POLD1P28340 1107 aa17.61■□□□□ 0.41
VPS33B-205ENST00000556096 KRT32Q14532 448 aa17.61■□□□□ 0.41
VPS33B-205ENST00000556096 ZSCAN25Q6NSZ9 544 aa17.61■□□□□ 0.41
VPS33B-205ENST00000556096 RUFY3Q7L099 469 aa17.61■□□□□ 0.41
VPS33B-205ENST00000556096 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.61■□□□□ 0.41
VPS33B-205ENST00000556096 PPP1R1BQ9UD71 204 aaPredicted RBP17.6■□□□□ 0.41
VPS33B-205ENST00000556096 PARP3Q9Y6F1 533 aa17.6■□□□□ 0.41
VPS33B-205ENST00000556096 MAST3O60307 1309 aa17.6■□□□□ 0.41
VPS33B-205ENST00000556096 COL4A1P02462 1669 aa17.59■□□□□ 0.41
VPS33B-205ENST00000556096 NPHP1O15259 732 aa17.59■□□□□ 0.41
VPS33B-205ENST00000556096 SERPINB2P05120 415 aa17.59■□□□□ 0.41
VPS33B-205ENST00000556096 CYP2E1P05181 493 aaPredicted RBP17.59■□□□□ 0.41
VPS33B-205ENST00000556096 NUCB2P80303 420 aa17.59■□□□□ 0.41
VPS33B-205ENST00000556096 PI16Q6UXB8 463 aa17.59■□□□□ 0.41
VPS33B-205ENST00000556096 CNBD1Q8NA66 436 aa17.59■□□□□ 0.41
VPS33B-205ENST00000556096 APPBP2Q92624 585 aa17.59■□□□□ 0.41
VPS33B-205ENST00000556096 ALDH8A1Q9H2A2 487 aaPredicted RBP17.59■□□□□ 0.41
VPS33B-205ENST00000556096 PDRG1Q9NUG6 133 aa17.59■□□□□ 0.41
VPS33B-205ENST00000556096 LIMCH1Q9UPQ0 1083 aa17.59■□□□□ 0.41
VPS33B-205ENST00000556096 ANKRD31Q8N7Z5 1873 aa17.59■□□□□ 0.41
VPS33B-205ENST00000556096 AK2P54819 239 aa17.58■□□□□ 0.41
VPS33B-205ENST00000556096 RPS8P62241 208 aaKnown RBP17.58■□□□□ 0.41
VPS33B-205ENST00000556096 UBE4AQ14139 1066 aa17.58■□□□□ 0.41
VPS33B-205ENST00000556096 SLFNL1Q499Z3 407 aa17.58■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms