RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 NEK4P51957 841 aa17.17■□□□□ 0.34
VPS33A-209ENST00000544349 CHRNDQ07001 517 aa17.17■□□□□ 0.34
VPS33A-209ENST00000544349 MAP4K1Q92918 833 aa17.17■□□□□ 0.34
VPS33A-209ENST00000544349 ZDHHC9Q9Y397 364 aa17.17■□□□□ 0.34
VPS33A-209ENST00000544349 AKAP11Q9UKA4 1901 aa17.17■□□□□ 0.34
VPS33A-209ENST00000544349 EP400Q96L91 3159 aa17.17■□□□□ 0.34
VPS33A-209ENST00000544349 CHGBP05060 677 aa17.17■□□□□ 0.34
VPS33A-209ENST00000544349 SLC5A1P13866 664 aa17.17■□□□□ 0.34
VPS33A-209ENST00000544349 ZNF589Q86UQ0 364 aaPredicted RBP17.17■□□□□ 0.34
VPS33A-209ENST00000544349 CCDC24Q8N4L8 307 aa17.17■□□□□ 0.34
VPS33A-209ENST00000544349 MCAMP43121 646 aa17.16■□□□□ 0.34
VPS33A-209ENST00000544349 ZAP70P43403 619 aa17.16■□□□□ 0.34
VPS33A-209ENST00000544349 NECTIN1Q15223 517 aa17.16■□□□□ 0.34
VPS33A-209ENST00000544349 MCMDC2Q4G0Z9 681 aa17.16■□□□□ 0.34
VPS33A-209ENST00000544349 CCDC102BQ68D86 513 aa17.16■□□□□ 0.34
VPS33A-209ENST00000544349 POTEAQ6S8J7 498 aa17.16■□□□□ 0.34
VPS33A-209ENST00000544349 CHAMP1Q96JM3 812 aa17.16■□□□□ 0.34
VPS33A-209ENST00000544349 GRPEL1Q9HAV7 217 aa17.16■□□□□ 0.34
VPS33A-209ENST00000544349 BSDC1Q9NW68 430 aaPredicted RBP17.16■□□□□ 0.34
VPS33A-209ENST00000544349 SNX14Q9Y5W7 946 aa17.16■□□□□ 0.34
VPS33A-209ENST00000544349 SNAP23O00161 211 aa17.15■□□□□ 0.34
VPS33A-209ENST00000544349 CELF1Q92879 486 aaKnown RBP17.15■□□□□ 0.34
VPS33A-209ENST00000544349 TMX3Q96JJ7 454 aa17.15■□□□□ 0.34
VPS33A-209ENST00000544349 NPHP1O15259 732 aa17.15■□□□□ 0.34
VPS33A-209ENST00000544349 ARID4AP29374 1257 aaPredicted RBP17.15■□□□□ 0.34
VPS33A-209ENST00000544349 PHKA1P46020 1223 aa17.15■□□□□ 0.34
VPS33A-209ENST00000544349 NUCB2P80303 420 aa17.15■□□□□ 0.34
VPS33A-209ENST00000544349 SKOR2Q2VWA4 1001 aaPredicted RBP17.15■□□□□ 0.34
VPS33A-209ENST00000544349 NOL8Q76FK4 1167 aaKnown RBP17.15■□□□□ 0.34
VPS33A-209ENST00000544349 RASEFQ8IZ41 740 aa17.15■□□□□ 0.34
VPS33A-209ENST00000544349 KCNB2Q92953 911 aa17.15■□□□□ 0.34
VPS33A-209ENST00000544349 SEC62Q99442 399 aaKnown RBP17.15■□□□□ 0.34
VPS33A-209ENST00000544349 HELLSQ9NRZ9 838 aa17.15■□□□□ 0.34
VPS33A-209ENST00000544349 RBM8AQ9Y5S9 174 aaKnown RBP17.15■□□□□ 0.34
VPS33A-209ENST00000544349 RNF113AO15541 343 aaKnown RBP17.14■□□□□ 0.33
VPS33A-209ENST00000544349 UQCRFS1P1P0C7P4 283 aa17.14■□□□□ 0.33
VPS33A-209ENST00000544349 MRE11P49959 708 aa17.14■□□□□ 0.33
VPS33A-209ENST00000544349 ZMYM1Q5SVZ6 1142 aa17.14■□□□□ 0.33
VPS33A-209ENST00000544349 MCTP1Q6DN14 999 aa17.14■□□□□ 0.33
VPS33A-209ENST00000544349 PI16Q6UXB8 463 aa17.14■□□□□ 0.33
VPS33A-209ENST00000544349 FAM43AQ8N2R8 423 aa17.14■□□□□ 0.33
VPS33A-209ENST00000544349 A0A1B0GUL6 1792 aa17.14■□□□□ 0.33
VPS33A-209ENST00000544349 PTMSP20962 102 aa17.14■□□□□ 0.33
VPS33A-209ENST00000544349 PRPF40BQ6NWY9 871 aaKnown RBP17.14■□□□□ 0.33
VPS33A-209ENST00000544349 CNBD1Q8NA66 436 aa17.14■□□□□ 0.33
VPS33A-209ENST00000544349 TNRC6CQ9HCJ0 1690 aaKnown RBP17.13■□□□□ 0.33
VPS33A-209ENST00000544349 TM4SF1P30408 202 aa17.13■□□□□ 0.33
VPS33A-209ENST00000544349 RPS8P62241 208 aaKnown RBP17.13■□□□□ 0.33
VPS33A-209ENST00000544349 LRRFIP1Q32MZ4 808 aaKnown RBP17.13■□□□□ 0.33
VPS33A-209ENST00000544349 UPF3BQ9BZI7 483 aaKnown RBP17.13■□□□□ 0.33
VPS33A-209ENST00000544349 RRAGDQ9NQL2 400 aaPredicted RBP17.13■□□□□ 0.33
VPS33A-209ENST00000544349 MINPP1Q9UNW1 487 aa17.13■□□□□ 0.33
VPS33A-209ENST00000544349 KCNJ4P48050 445 aa17.12■□□□□ 0.33
VPS33A-209ENST00000544349 ZNF827Q17R98 1081 aa17.12■□□□□ 0.33
VPS33A-209ENST00000544349 SLFNL1Q499Z3 407 aa17.12■□□□□ 0.33
VPS33A-209ENST00000544349 PRR5LQ6MZQ0 368 aa17.12■□□□□ 0.33
VPS33A-209ENST00000544349 CCDC129Q6ZRS4 1044 aa17.12■□□□□ 0.33
VPS33A-209ENST00000544349 AKT1S1Q96B36 256 aa17.12■□□□□ 0.33
VPS33A-209ENST00000544349 CWC22Q9HCG8 908 aaKnown RBP17.12■□□□□ 0.33
VPS33A-209ENST00000544349 TNS1Q9HBL0 1735 aaKnown RBP17.12■□□□□ 0.33
VPS33A-209ENST00000544349 GOLGA6L22H0YM25 854 aa17.12■□□□□ 0.33
VPS33A-209ENST00000544349 CREB3L3Q68CJ9 461 aa17.12■□□□□ 0.33
VPS33A-209ENST00000544349 TFCP2L1Q9NZI6 479 aa17.12■□□□□ 0.33
VPS33A-209ENST00000544349 MYH7P12883 1935 aa17.11■□□□□ 0.33
VPS33A-209ENST00000544349 SERPINB2P05120 415 aa17.11■□□□□ 0.33
VPS33A-209ENST00000544349 ZFYP08048 801 aaPredicted RBP17.11■□□□□ 0.33
VPS33A-209ENST00000544349 MCM2P49736 904 aa17.11■□□□□ 0.33
VPS33A-209ENST00000544349 TTF1Q15361 905 aaPredicted RBP17.11■□□□□ 0.33
VPS33A-209ENST00000544349 KLHL40Q2TBA0 621 aa17.11■□□□□ 0.33
VPS33A-209ENST00000544349 LMBRD1Q9NUN5 540 aa17.11■□□□□ 0.33
VPS33A-209ENST00000544349 DDX49Q9Y6V7 483 aaKnown RBP17.11■□□□□ 0.33
VPS33A-209ENST00000544349 UBE4AQ14139 1066 aa17.11■□□□□ 0.33
VPS33A-209ENST00000544349 SLC27A2O14975 620 aa17.1■□□□□ 0.33
VPS33A-209ENST00000544349 ZKSCAN1P17029 563 aaPredicted RBP17.1■□□□□ 0.33
VPS33A-209ENST00000544349 FOXD4L5Q5VV16 416 aaPredicted RBP17.1■□□□□ 0.33
VPS33A-209ENST00000544349 FOXD4L4Q8WXT5 416 aaPredicted RBP17.1■□□□□ 0.33
VPS33A-209ENST00000544349 HMG20BQ9P0W2 317 aa17.1■□□□□ 0.33
VPS33A-209ENST00000544349 BCAMP50895 628 aa17.09■□□□□ 0.33
VPS33A-209ENST00000544349 CUL4AQ13619 759 aa17.09■□□□□ 0.33
VPS33A-209ENST00000544349 MAST3O60307 1309 aa17.09■□□□□ 0.33
VPS33A-209ENST00000544349 RGPD3A6NKT7 1758 aaPredicted RBP17.09■□□□□ 0.33
VPS33A-209ENST00000544349 RGPD4Q7Z3J3 1758 aa17.09■□□□□ 0.33
VPS33A-209ENST00000544349 ADCK5Q3MIX3 580 aa17.09■□□□□ 0.33
VPS33A-209ENST00000544349 RNF20Q5VTR2 975 aa17.09■□□□□ 0.33
VPS33A-209ENST00000544349 SPATA5Q8NB90 893 aa17.09■□□□□ 0.33
VPS33A-209ENST00000544349 OSBP2Q969R2 916 aa17.09■□□□□ 0.33
VPS33A-209ENST00000544349 TM6SF1Q9BZW5 370 aa17.09■□□□□ 0.33
VPS33A-209ENST00000544349 ISY1Q9ULR0 285 aaKnown RBP17.09■□□□□ 0.33
VPS33A-209ENST00000544349 MYO5AQ9Y4I1 1855 aaKnown RBP17.09■□□□□ 0.33
VPS33A-209ENST00000544349 M0R2C6 588 aa17.08■□□□□ 0.33
VPS33A-209ENST00000544349 ST5P78524 1137 aa17.08■□□□□ 0.33
VPS33A-209ENST00000544349 DDR1Q08345 913 aa17.08■□□□□ 0.33
VPS33A-209ENST00000544349 RASGRF1Q13972 1273 aa17.08■□□□□ 0.33
VPS33A-209ENST00000544349 COL23A1Q86Y22 540 aaPredicted RBP17.08■□□□□ 0.33
VPS33A-209ENST00000544349 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.08■□□□□ 0.33
VPS33A-209ENST00000544349 PIH1D3Q9NQM4 214 aaKnown RBP17.08■□□□□ 0.33
VPS33A-209ENST00000544349 U3KPZ7 1027 aaPredicted RBP17.08■□□□□ 0.33
VPS33A-209ENST00000544349 POLRMTO00411 1230 aaKnown RBP17.08■□□□□ 0.32
VPS33A-209ENST00000544349 TSGA10IPQ3SY00 556 aa17.08■□□□□ 0.32
VPS33A-209ENST00000544349 ZSCAN25Q6NSZ9 544 aa17.08■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.3 ms