RNA–Protein interactions for RNA: ENST00000542033.5

USP28-210, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 852 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-210ENST00000542033 RASSF4Q9H2L5 321 aa5.67□□□□□ -1.5
USP28-210ENST00000542033 CHRDQ9H2X0 955 aa5.67□□□□□ -1.5
USP28-210ENST00000542033 FOXD3Q9UJU5 478 aaPredicted RBP5.67□□□□□ -1.5
USP28-210ENST00000542033 C9orf172C9J069 976 aa5.66□□□□□ -1.5
USP28-210ENST00000542033 FAM229AH3BQW9 127 aa5.66□□□□□ -1.5
USP28-210ENST00000542033 MSTNO14793 375 aa5.66□□□□□ -1.5
USP28-210ENST00000542033 EREGO14944 169 aa5.66□□□□□ -1.5
USP28-210ENST00000542033 GPR182O15218 404 aa5.66□□□□□ -1.5
USP28-210ENST00000542033 CDC27P30260 824 aa5.66□□□□□ -1.5
USP28-210ENST00000542033 ATP11AP98196 1134 aa5.66□□□□□ -1.5
USP28-210ENST00000542033 PLCB3Q01970 1234 aa5.66□□□□□ -1.5
USP28-210ENST00000542033 FAM117BQ6P1L5 589 aa5.66□□□□□ -1.5
USP28-210ENST00000542033 NIF3L1Q9GZT8 377 aa5.66□□□□□ -1.5
USP28-210ENST00000542033 ZFYVE28Q9HCC9 887 aa5.66□□□□□ -1.5
USP28-210ENST00000542033 TRIM33Q9UPN9 1127 aa5.66□□□□□ -1.5
USP28-210ENST00000542033 CABP4P57796 275 aa5.65□□□□□ -1.5
USP28-210ENST00000542033 NRG1Q02297 640 aaPredicted RBP5.65□□□□□ -1.5
USP28-210ENST00000542033 FBXO11Q86XK2 927 aa5.65□□□□□ -1.5
USP28-210ENST00000542033 ALKBH8Q96BT7 664 aaKnown RBP5.65□□□□□ -1.5
USP28-210ENST00000542033 LACRTQ9GZZ8 138 aa5.65□□□□□ -1.5
USP28-210ENST00000542033 PPME1Q9Y570 386 aa5.65□□□□□ -1.5
USP28-210ENST00000542033 C1QTNF9BB2RNN3 333 aa5.64□□□□□ -1.51
USP28-210ENST00000542033 PDE2AO00408 941 aaPredicted RBP5.64□□□□□ -1.51
USP28-210ENST00000542033 TREHO43280 583 aa5.64□□□□□ -1.51
USP28-210ENST00000542033 CPNE3O75131 537 aaKnown RBP5.64□□□□□ -1.51
USP28-210ENST00000542033 ORC1Q13415 861 aa5.64□□□□□ -1.51
USP28-210ENST00000542033 GRIK4Q16099 956 aa5.64□□□□□ -1.51
USP28-210ENST00000542033 XP32Q5T750 250 aa5.64□□□□□ -1.51
USP28-210ENST00000542033 ILDR2Q71H61 639 aa5.64□□□□□ -1.51
USP28-210ENST00000542033 CD163Q86VB7 1156 aa5.64□□□□□ -1.51
USP28-210ENST00000542033 TMEM102Q8N9M5 508 aaPredicted RBP5.64□□□□□ -1.51
USP28-210ENST00000542033 OSMRQ99650 979 aa5.64□□□□□ -1.51
USP28-210ENST00000542033 DNAJC25Q9H1X3 360 aa5.64□□□□□ -1.51
USP28-210ENST00000542033 DZANK1Q9NVP4 752 aa5.64□□□□□ -1.51
USP28-210ENST00000542033 PODXL2Q9NZ53 605 aa5.64□□□□□ -1.51
USP28-210ENST00000542033 ANKRD33BA6NCL7 494 aa5.63□□□□□ -1.51
USP28-210ENST00000542033 EIF1AYO14602 144 aaKnown RBP5.63□□□□□ -1.51
USP28-210ENST00000542033 IGHA2P01877 340 aa5.63□□□□□ -1.51
USP28-210ENST00000542033 CHRNA4P43681 627 aa5.63□□□□□ -1.51
USP28-210ENST00000542033 GATA4P43694 442 aa5.63□□□□□ -1.51
USP28-210ENST00000542033 BAG6P46379 1132 aa5.63□□□□□ -1.51
USP28-210ENST00000542033 LENG1Q96BZ8 264 aaPredicted RBP5.63□□□□□ -1.51
USP28-210ENST00000542033 POP1Q99575 1024 aaKnown RBP5.63□□□□□ -1.51
USP28-210ENST00000542033 SPOCK3Q9BQ16 436 aa5.63□□□□□ -1.51
USP28-210ENST00000542033 USP21Q9UK80 565 aa5.63□□□□□ -1.51
USP28-210ENST00000542033 POLR3DP05423 398 aaPredicted RBP5.62□□□□□ -1.51
USP28-210ENST00000542033 ERCC3P19447 782 aa5.62□□□□□ -1.51
USP28-210ENST00000542033 MAPK8P45983 427 aa5.62□□□□□ -1.51
USP28-210ENST00000542033 DSC3Q14574 896 aa5.62□□□□□ -1.51
USP28-210ENST00000542033 IGF2-ASQ6U949 168 aa5.62□□□□□ -1.51
USP28-210ENST00000542033 GALNT12Q8IXK2 581 aa5.62□□□□□ -1.51
USP28-210ENST00000542033 CSRNP1Q96S65 589 aa5.62□□□□□ -1.51
USP28-210ENST00000542033 ZKSCAN3Q9BRR0 538 aa5.62□□□□□ -1.51
USP28-210ENST00000542033 ADAM19Q9H013 955 aa5.62□□□□□ -1.51
USP28-210ENST00000542033 PNMA6FA0A0J9YX94 578 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 H3BRJ5 948 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 LINC01387J3KSC0 135 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 NFKBIEO00221 500 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 EIF4EBP3O60516 100 aaPredicted RBP5.61□□□□□ -1.51
USP28-210ENST00000542033 ITGB2P05107 769 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 ACPPP15309 386 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 SELPP16109 830 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 ARL4DP49703 201 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 MFAP1P55081 439 aaKnown RBP5.61□□□□□ -1.51
USP28-210ENST00000542033 ATP2B2Q01814 1243 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 KLHL23Q8NBE8 558 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 BSNDQ8WZ55 320 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 WNT8BQ93098 351 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 KRTAP4-8Q9BYQ9 185 aa5.61□□□□□ -1.51
USP28-210ENST00000542033 BHLHE41Q9C0J9 482 aaPredicted RBP5.61□□□□□ -1.51
USP28-210ENST00000542033 MRPL18Q9H0U6 180 aaKnown RBP5.61□□□□□ -1.51
USP28-210ENST00000542033 DLL1O00548 723 aa5.6□□□□□ -1.51
USP28-210ENST00000542033 DEAF1O75398 565 aaPredicted RBP5.6□□□□□ -1.51
USP28-210ENST00000542033 PROCP04070 461 aa5.6□□□□□ -1.51
USP28-210ENST00000542033 PIP4K2BP78356 416 aa5.6□□□□□ -1.51
USP28-210ENST00000542033 FMR1Q06787 632 aaKnown RBP eCLIP5.6□□□□□ -1.51
USP28-210ENST00000542033 ADGRE1Q14246 886 aa5.6□□□□□ -1.51
USP28-210ENST00000542033 SETDB1Q15047 1291 aa5.6□□□□□ -1.51
USP28-210ENST00000542033 ENOX2Q16206 610 aaKnown RBP5.6□□□□□ -1.51
USP28-210ENST00000542033 USPL1Q5W0Q7 1092 aa5.6□□□□□ -1.51
USP28-210ENST00000542033 DNAJC14Q6Y2X3 702 aaPredicted RBP5.6□□□□□ -1.51
USP28-210ENST00000542033 TXNRD3Q86VQ6 643 aa5.6□□□□□ -1.51
USP28-210ENST00000542033 ASAP3Q8TDY4 903 aa5.6□□□□□ -1.51
USP28-210ENST00000542033 NXPE3Q969Y0 559 aa5.6□□□□□ -1.51
USP28-210ENST00000542033 CCDC74AQ96AQ1 378 aa5.6□□□□□ -1.51
USP28-210ENST00000542033 SEC31BQ9NQW1 1179 aa5.6□□□□□ -1.51
USP28-210ENST00000542033 NLRP2Q9NX02 1062 aa5.6□□□□□ -1.51
USP28-210ENST00000542033 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.6□□□□□ -1.51
USP28-210ENST00000542033 FSCN2O14926 492 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 TRPA1O75762 1119 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 P4HBP07237 508 aaKnown RBP5.59□□□□□ -1.51
USP28-210ENST00000542033 EPHA1P21709 976 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 CDC25BP30305 580 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 FGD1P98174 961 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 MBTPS1Q14703 1052 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 COL19A1Q14993 1142 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 EAPPQ56P03 285 aaPredicted RBP5.59□□□□□ -1.51
USP28-210ENST00000542033 KIAA0319Q5VV43 1072 aa5.59□□□□□ -1.51
USP28-210ENST00000542033 PEAR1Q5VY43 1037 aaPredicted RBP5.59□□□□□ -1.51
USP28-210ENST00000542033 SHISA2Q6UWI4 295 aa5.59□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms