RNA–Protein interactions for RNA: ENST00000541110.5

TRERF1-205, Transcript of transcriptional regulating factor 1, humanhuman

TSL 1 (best) BASIC

Gene TRERF1, Length 7,646 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRERF1-205ENST00000541110 PPP4R4Q6NUP7 873 aa11.33□□□□□ -0.6
TRERF1-205ENST00000541110 DNAAF4Q8WXU2 420 aa11.33□□□□□ -0.6
TRERF1-205ENST00000541110 FRMD4BQ9Y2L6 1034 aa11.33□□□□□ -0.6
TRERF1-205ENST00000541110 HSPA4P34932 840 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 SEC62Q99442 399 aaKnown RBP11.32□□□□□ -0.6
TRERF1-205ENST00000541110 EIF6P56537 245 aaKnown RBP11.32□□□□□ -0.6
TRERF1-205ENST00000541110 NAA25Q14CX7 972 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 STMN4Q9H169 189 aaPredicted RBP11.32□□□□□ -0.6
TRERF1-205ENST00000541110 ORC3Q9UBD5 711 aaPredicted RBP11.32□□□□□ -0.6
TRERF1-205ENST00000541110 CCDC169A6NNP5 214 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 GJB2P29033 226 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 BIRC3Q13489 604 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 CCDC125Q86Z20 511 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 KIF22Q14807 665 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 FAM47CQ5HY64 1035 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 RIOK1Q9BRS2 568 aaKnown RBP11.32□□□□□ -0.6
TRERF1-205ENST00000541110 MSH6P52701 1360 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 HSPA1LP34931 641 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 TRPC3Q13507 836 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 EHBP1Q8NDI1 1231 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 SAP30BPQ9UHR5 308 aaKnown RBP11.32□□□□□ -0.6
TRERF1-205ENST00000541110 FANCIQ9NVI1 1328 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 STK10O94804 968 aaKnown RBP11.32□□□□□ -0.6
TRERF1-205ENST00000541110 MCM5P33992 734 aa11.32□□□□□ -0.6
TRERF1-205ENST00000541110 ZBTB9Q96C00 473 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 NSD3Q9BZ95 1437 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 FAM204AQ9H8W3 233 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 CD2APQ9Y5K6 639 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 TOP2AP11388 1531 aaKnown RBP11.31□□□□□ -0.6
TRERF1-205ENST00000541110 ITIH3Q06033 890 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 FLIIQ13045 1269 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 PLCB4Q15147 1175 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 ZYXQ15942 572 aaKnown RBP11.31□□□□□ -0.6
TRERF1-205ENST00000541110 ESR2Q92731 530 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 DBF4Q9UBU7 674 aaPredicted RBP11.31□□□□□ -0.6
TRERF1-205ENST00000541110 NSFL1CQ9UNZ2 370 aaKnown RBP11.31□□□□□ -0.6
TRERF1-205ENST00000541110 TMPOP42166 694 aaKnown RBP11.31□□□□□ -0.6
TRERF1-205ENST00000541110 CCDC102BQ68D86 513 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 MRRFQ96E11 262 aaKnown RBP11.31□□□□□ -0.6
TRERF1-205ENST00000541110 PRDM10Q9NQV6 1147 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 CCDC61Q9Y6R9 512 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 PTPDC1A2A3K4 754 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 STRN3Q13033 797 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 INF2Q27J81 1249 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 MYCLP12524 364 aaPredicted RBP11.31□□□□□ -0.6
TRERF1-205ENST00000541110 ALDH3A1P30838 453 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 CYLC1P35663 651 aaPredicted RBP11.31□□□□□ -0.6
TRERF1-205ENST00000541110 SYKP43405 635 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 SNW1Q13573 536 aaKnown RBP11.31□□□□□ -0.6
TRERF1-205ENST00000541110 PSMD6Q15008 389 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 CDAN1Q8IWY9 1227 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 RPAP2Q8IXW5 612 aaPredicted RBP11.31□□□□□ -0.6
TRERF1-205ENST00000541110 IFNL2Q8IZJ0 200 aa11.31□□□□□ -0.6
TRERF1-205ENST00000541110 CHMP2AO43633 222 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 UQCRFS1P1P0C7P4 283 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 CCT6AP40227 531 aaKnown RBP11.3□□□□□ -0.6
TRERF1-205ENST00000541110 FEZ2Q9UHY8 353 aaPredicted RBP11.3□□□□□ -0.6
TRERF1-205ENST00000541110 MAEAQ7L5Y9 396 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 ZBTB43O43298 467 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 MCM7P33993 719 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 SPC25Q9HBM1 224 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 ATAD2Q6PL18 1390 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 UBASH3AP57075 661 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 HS2ST1Q7LGA3 356 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 LMBR1Q8WVP7 490 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 JAKMIP2Q96AA8 810 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 BRPF3Q9ULD4 1205 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 OATP04181 439 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 KIFAP3Q92845 792 aa11.3□□□□□ -0.6
TRERF1-205ENST00000541110 WDR46O15213 610 aaKnown RBP11.3□□□□□ -0.6
TRERF1-205ENST00000541110 RBM17Q96I25 401 aaKnown RBP11.3□□□□□ -0.6
TRERF1-205ENST00000541110 SUPT6HQ7KZ85 1726 aaKnown RBP11.3□□□□□ -0.6
TRERF1-205ENST00000541110 GABPB2Q8TAK5 448 aaPredicted RBP11.29□□□□□ -0.6
TRERF1-205ENST00000541110 NEK1Q96PY6 1258 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 MCM9Q9NXL9 1143 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 GSDMDP57764 484 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 ALG1Q9BT22 464 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 PHF8Q9UPP1 1060 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 RAPGEF1Q13905 1077 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 ERCC6LQ2NKX8 1250 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 NBPF1Q3BBV0 1214 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 NEK11Q8NG66 645 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 IFT74Q96LB3 600 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 LIMCH1Q9UPQ0 1083 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 DDX39AO00148 427 aaKnown RBP11.29□□□□□ -0.6
TRERF1-205ENST00000541110 GNAQP50148 359 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 PLIN2Q99541 437 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 RNF169Q8NCN4 708 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 SMCR8Q8TEV9 937 aaPredicted RBP11.29□□□□□ -0.6
TRERF1-205ENST00000541110 EYA3Q99504 573 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 MED10Q9BTT4 135 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 GTF2F1P35269 517 aaKnown RBP eCLIP11.29□□□□□ -0.6
TRERF1-205ENST00000541110 ATP6V1E1P36543 226 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 DDB1Q16531 1140 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 CCDC129Q6ZRS4 1044 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 MAGEB6Q8N7X4 407 aa11.29□□□□□ -0.6
TRERF1-205ENST00000541110 CASC4Q6P4E1 433 aa11.28□□□□□ -0.6
TRERF1-205ENST00000541110 TTC30AQ86WT1 665 aa11.28□□□□□ -0.6
TRERF1-205ENST00000541110 AFAP1L2Q8N4X5 818 aa11.28□□□□□ -0.6
TRERF1-205ENST00000541110 CTAGE1Q96RT6 745 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms