RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 STIM2Q9P246 746 aa9.75□□□□□ -0.85
SYNE1-232ENST00000535081 BTBD11A6QL63 1104 aa9.74□□□□□ -0.85
SYNE1-232ENST00000535081 PTPRAP18433 802 aa9.74□□□□□ -0.85
SYNE1-232ENST00000535081 GP2P55259 537 aaKnown RBP9.74□□□□□ -0.85
SYNE1-232ENST00000535081 NCAPG2Q86XI2 1143 aa9.74□□□□□ -0.85
SYNE1-232ENST00000535081 TRIM42Q8IWZ5 723 aa9.74□□□□□ -0.85
SYNE1-232ENST00000535081 ABTB2Q8N961 1025 aa9.74□□□□□ -0.85
SYNE1-232ENST00000535081 FOXD4L4Q8WXT5 416 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-232ENST00000535081 MYRFLQ96LU7 910 aa9.74□□□□□ -0.85
SYNE1-232ENST00000535081 SH2B1Q9NRF2 756 aaPredicted RBP9.74□□□□□ -0.85
SYNE1-232ENST00000535081 OAS3Q9Y6K5 1087 aaKnown RBP9.74□□□□□ -0.85
SYNE1-232ENST00000535081 FAM177BA6PVY3 158 aa9.73□□□□□ -0.85
SYNE1-232ENST00000535081 ZBTB39O15060 712 aa9.73□□□□□ -0.85
SYNE1-232ENST00000535081 ADAM11O75078 769 aa9.73□□□□□ -0.85
SYNE1-232ENST00000535081 CEP120Q8N960 986 aa9.73□□□□□ -0.85
SYNE1-232ENST00000535081 UBASH3BQ8TF42 649 aa9.73□□□□□ -0.85
SYNE1-232ENST00000535081 DBNDD2Q9BQY9 259 aa9.73□□□□□ -0.85
SYNE1-232ENST00000535081 SEC31BQ9NQW1 1179 aa9.73□□□□□ -0.85
SYNE1-232ENST00000535081 HMX2A2RU54 273 aa9.72□□□□□ -0.85
SYNE1-232ENST00000535081 DDX3YO15523 660 aaKnown RBP9.72□□□□□ -0.85
SYNE1-232ENST00000535081 GRIK1P39086 918 aa9.72□□□□□ -0.85
SYNE1-232ENST00000535081 TMEM164Q5U3C3 297 aa9.72□□□□□ -0.85
SYNE1-232ENST00000535081 RNF43Q68DV7 783 aa9.72□□□□□ -0.85
SYNE1-232ENST00000535081 INTS5Q6P9B9 1019 aaKnown RBP9.72□□□□□ -0.85
SYNE1-232ENST00000535081 ADAM19Q9H013 955 aa9.72□□□□□ -0.85
SYNE1-232ENST00000535081 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.71□□□□□ -0.86
SYNE1-232ENST00000535081 SPINK2P20155 84 aa9.71□□□□□ -0.86
SYNE1-232ENST00000535081 PDE12Q6L8Q7 609 aaKnown RBP9.71□□□□□ -0.86
SYNE1-232ENST00000535081 KLHDC7BQ96G42 594 aa9.71□□□□□ -0.86
SYNE1-232ENST00000535081 POP1Q99575 1024 aaKnown RBP9.71□□□□□ -0.86
SYNE1-232ENST00000535081 KRTAP9-9Q9BYP9 154 aa9.71□□□□□ -0.86
SYNE1-232ENST00000535081 KRTAP9-4Q9BYQ2 154 aa9.71□□□□□ -0.86
SYNE1-232ENST00000535081 TMEM63CQ9P1W3 806 aa9.71□□□□□ -0.86
SYNE1-232ENST00000535081 H3BRJ5 948 aa9.7□□□□□ -0.86
SYNE1-232ENST00000535081 ATG7O95352 703 aa9.7□□□□□ -0.86
SYNE1-232ENST00000535081 SRPK2P78362 688 aaKnown RBP9.7□□□□□ -0.86
SYNE1-232ENST00000535081 CLP1Q92989 425 aaKnown RBP9.7□□□□□ -0.86
SYNE1-232ENST00000535081 ELP3Q9H9T3 547 aa9.7□□□□□ -0.86
SYNE1-232ENST00000535081 KANSL3Q9P2N6 904 aa9.7□□□□□ -0.86
SYNE1-232ENST00000535081 CABP4P57796 275 aa9.69□□□□□ -0.86
SYNE1-232ENST00000535081 PIP4K2BP78356 416 aa9.69□□□□□ -0.86
SYNE1-232ENST00000535081 PPP1R3FQ6ZSY5 799 aaPredicted RBP9.69□□□□□ -0.86
SYNE1-232ENST00000535081 ZNF438Q7Z4V0 828 aa9.69□□□□□ -0.86
SYNE1-232ENST00000535081 FAM20CQ8IXL6 584 aa9.69□□□□□ -0.86
SYNE1-232ENST00000535081 NUDT16Q96DE0 195 aaKnown RBP9.69□□□□□ -0.86
SYNE1-232ENST00000535081 FMNL2Q96PY5 1086 aa9.69□□□□□ -0.86
SYNE1-232ENST00000535081 PRR19A6NJB7 356 aa9.68□□□□□ -0.86
SYNE1-232ENST00000535081 SART1O43290 800 aaKnown RBP9.68□□□□□ -0.86
SYNE1-232ENST00000535081 TXKP42681 527 aa9.68□□□□□ -0.86
SYNE1-232ENST00000535081 ANKRD34AQ69YU3 496 aa9.68□□□□□ -0.86
SYNE1-232ENST00000535081 CLEC10AQ8IUN9 316 aa9.68□□□□□ -0.86
SYNE1-232ENST00000535081 WNT8BQ93098 351 aa9.68□□□□□ -0.86
SYNE1-232ENST00000535081 ADAMTS4O75173 837 aa9.67□□□□□ -0.86
SYNE1-232ENST00000535081 TAL1P17542 331 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-232ENST00000535081 PREPP48147 710 aa9.67□□□□□ -0.86
SYNE1-232ENST00000535081 BEND4Q6ZU67 534 aa9.67□□□□□ -0.86
SYNE1-232ENST00000535081 FAM83CQ9BQN1 747 aa9.67□□□□□ -0.86
SYNE1-232ENST00000535081 ZMYND15Q9H091 742 aa9.67□□□□□ -0.86
SYNE1-232ENST00000535081 RNF208Q9H0X6 261 aa9.67□□□□□ -0.86
SYNE1-232ENST00000535081 KCNF1Q9H3M0 494 aa9.67□□□□□ -0.86
SYNE1-232ENST00000535081 OSGEPQ9NPF4 335 aa9.67□□□□□ -0.86
SYNE1-232ENST00000535081 CNTN3Q9P232 1028 aa9.67□□□□□ -0.86
SYNE1-232ENST00000535081 BMP3P12645 472 aa9.66□□□□□ -0.86
SYNE1-232ENST00000535081 DTX1Q86Y01 620 aa9.66□□□□□ -0.86
SYNE1-232ENST00000535081 SHKBP1Q8TBC3 707 aa9.66□□□□□ -0.86
SYNE1-232ENST00000535081 ACPPP15309 386 aa9.65□□□□□ -0.86
SYNE1-232ENST00000535081 NLRP12P59046 1061 aa9.65□□□□□ -0.86
SYNE1-232ENST00000535081 ATCAYQ86WG3 371 aa9.65□□□□□ -0.86
SYNE1-232ENST00000535081 SALL4Q9UJQ4 1053 aa9.65□□□□□ -0.86
SYNE1-232ENST00000535081 HIF3AQ9Y2N7 669 aa9.65□□□□□ -0.86
SYNE1-232ENST00000535081 RPLP1P05386 114 aaKnown RBP9.64□□□□□ -0.87
SYNE1-232ENST00000535081 FDX2Q6P4F2 183 aa9.64□□□□□ -0.87
SYNE1-232ENST00000535081 RUSC1Q9BVN2 902 aa9.64□□□□□ -0.87
SYNE1-232ENST00000535081 SEPT3Q9UH03 358 aa9.64□□□□□ -0.87
SYNE1-232ENST00000535081 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.64□□□□□ -0.87
SYNE1-232ENST00000535081 NFKBIEO00221 500 aa9.63□□□□□ -0.87
SYNE1-232ENST00000535081 CES1P23141 567 aa9.63□□□□□ -0.87
SYNE1-232ENST00000535081 C1orf127Q8N9H9 656 aa9.63□□□□□ -0.87
SYNE1-232ENST00000535081 SLC7A3Q8WY07 619 aa9.63□□□□□ -0.87
SYNE1-232ENST00000535081 DZANK1Q9NVP4 752 aa9.63□□□□□ -0.87
SYNE1-232ENST00000535081 SLAIN2Q9P270 581 aa9.63□□□□□ -0.87
SYNE1-232ENST00000535081 PDE2AO00408 941 aaPredicted RBP9.62□□□□□ -0.87
SYNE1-232ENST00000535081 ATP2B4P23634 1241 aa9.62□□□□□ -0.87
SYNE1-232ENST00000535081 EDEM1Q92611 657 aa9.62□□□□□ -0.87
SYNE1-232ENST00000535081 GAS2O43903 313 aaKnown RBP9.61□□□□□ -0.87
SYNE1-232ENST00000535081 WNT11O96014 354 aa9.61□□□□□ -0.87
SYNE1-232ENST00000535081 XKR5Q6UX68 686 aa9.61□□□□□ -0.87
SYNE1-232ENST00000535081 SOX13Q9UN79 622 aa9.61□□□□□ -0.87
SYNE1-232ENST00000535081 RNF114Q9Y508 228 aa9.61□□□□□ -0.87
SYNE1-232ENST00000535081 ARL4DP49703 201 aa9.6□□□□□ -0.87
SYNE1-232ENST00000535081 C19orf57Q0VDD7 668 aa9.6□□□□□ -0.87
SYNE1-232ENST00000535081 HHIPQ96QV1 700 aa9.6□□□□□ -0.87
SYNE1-232ENST00000535081 WDR64B1ANS9 1081 aa9.59□□□□□ -0.87
SYNE1-232ENST00000535081 TRPA1O75762 1119 aa9.59□□□□□ -0.87
SYNE1-232ENST00000535081 PCSK2P16519 638 aa9.59□□□□□ -0.87
SYNE1-232ENST00000535081 YBX3P16989 372 aaKnown RBP eCLIP9.59□□□□□ -0.87
SYNE1-232ENST00000535081 DNM1Q05193 864 aaKnown RBP9.59□□□□□ -0.87
SYNE1-232ENST00000535081 HELQQ8TDG4 1101 aa9.59□□□□□ -0.87
SYNE1-232ENST00000535081 MFSD14AQ96MC6 490 aa9.59□□□□□ -0.87
SYNE1-232ENST00000535081 MEGF11A6BM72 1044 aa9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms