RNA–Protein interactions for RNA: ENST00000535081.1

SYNE1-232, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 561 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-232ENST00000535081 AEBP2Q6ZN18 517 aaPredicted RBP34.37■■■■□ 3.09
SYNE1-232ENST00000535081 CHIC1Q5VXU3 224 aa32.65■■■□□ 2.82
SYNE1-232ENST00000535081 SENP3Q9H4L4 574 aaPredicted RBP29.34■■■□□ 2.29
SYNE1-232ENST00000535081 PHF23Q9BUL5 403 aaPredicted RBP28.93■■■□□ 2.22
SYNE1-232ENST00000535081 FOXD1Q16676 465 aa27.32■■□□□ 1.96
SYNE1-232ENST00000535081 PLPPR3Q6T4P5 718 aa26.1■■□□□ 1.77
SYNE1-232ENST00000535081 MSH5O43196 834 aa25.59■■□□□ 1.69
SYNE1-232ENST00000535081 PIAS4Q8N2W9 510 aaPredicted RBP25.55■■□□□ 1.68
SYNE1-232ENST00000535081 PPP6R1Q9UPN7 881 aa25.54■■□□□ 1.68
SYNE1-232ENST00000535081 ADRA2BP18089 450 aa25.46■■□□□ 1.67
SYNE1-232ENST00000535081 POTEDQ86YR6 584 aa24.95■■□□□ 1.58
SYNE1-232ENST00000535081 MAPK8IP2Q13387 824 aaPredicted RBP23.38■■□□□ 1.33
SYNE1-232ENST00000535081 SCAF1Q9H7N4 1312 aaKnown RBP23.32■■□□□ 1.32
SYNE1-232ENST00000535081 DMRT2Q9Y5R5 561 aa23.26■■□□□ 1.31
SYNE1-232ENST00000535081 PPP4R3CPQ6ZMV5 832 aa22.87■■□□□ 1.25
SYNE1-232ENST00000535081 CNKSR2Q8WXI2 1034 aa22.45■■□□□ 1.18
SYNE1-232ENST00000535081 HOXD11P31277 338 aaPredicted RBP22.4■■□□□ 1.18
SYNE1-232ENST00000535081 DCAF8L1A6NGE4 600 aa22.31■■□□□ 1.16
SYNE1-232ENST00000535081 RNF216Q9NWF9 866 aaPredicted RBP22.24■■□□□ 1.15
SYNE1-232ENST00000535081 NCBP3Q53F19 620 aaKnown RBP22.01■■□□□ 1.11
SYNE1-232ENST00000535081 CACNB1Q02641 598 aaPredicted RBP21.95■■□□□ 1.1
SYNE1-232ENST00000535081 RNF39Q9H2S5 420 aa21.83■■□□□ 1.09
SYNE1-232ENST00000535081 NPM3O75607 178 aaKnown RBP21.68■■□□□ 1.06
SYNE1-232ENST00000535081 DNAJC5BQ9UF47 199 aa21.63■■□□□ 1.05
SYNE1-232ENST00000535081 C1QBPQ07021 282 aaKnown RBP21.51■■□□□ 1.03
SYNE1-232ENST00000535081 GRWD1Q9BQ67 446 aaKnown RBP eCLIP21.35■■□□□ 1.01
SYNE1-232ENST00000535081 KCNA4P22459 653 aa21.27■■□□□ 1
SYNE1-232ENST00000535081 U3KPZ7 1027 aaPredicted RBP20.9■□□□□ 0.94
SYNE1-232ENST00000535081 SLC4A2P04920 1241 aa20.7■□□□□ 0.9
SYNE1-232ENST00000535081 SPINK5Q9NQ38 1064 aaPredicted RBP20.6■□□□□ 0.89
SYNE1-232ENST00000535081 CAPN15O75808 1086 aa20.57■□□□□ 0.88
SYNE1-232ENST00000535081 DSG3P32926 999 aa20.44■□□□□ 0.86
SYNE1-232ENST00000535081 APLP2Q06481 763 aa20.35■□□□□ 0.85
SYNE1-232ENST00000535081 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.32■□□□□ 0.84
SYNE1-232ENST00000535081 HNRNPUL2Q1KMD3 747 aaKnown RBP20.32■□□□□ 0.84
SYNE1-232ENST00000535081 TRHP20396 242 aaPredicted RBP20.24■□□□□ 0.83
SYNE1-232ENST00000535081 ZNF219Q9P2Y4 722 aaPredicted RBP20.22■□□□□ 0.83
SYNE1-232ENST00000535081 SAMD1Q6SPF0 538 aaPredicted RBP20.2■□□□□ 0.82
SYNE1-232ENST00000535081 ABCB7O75027 752 aa20.1■□□□□ 0.81
SYNE1-232ENST00000535081 SLC4A1APQ9BWU0 796 aaKnown RBP20.09■□□□□ 0.81
SYNE1-232ENST00000535081 MYCNP04198 464 aaPredicted RBP20.07■□□□□ 0.8
SYNE1-232ENST00000535081 FOXD4L1Q9NU39 408 aa19.86■□□□□ 0.77
SYNE1-232ENST00000535081 POLA2Q14181 598 aa19.68■□□□□ 0.74
SYNE1-232ENST00000535081 ATF5Q9Y2D1 282 aaPredicted RBP19.58■□□□□ 0.72
SYNE1-232ENST00000535081 ZBTB22O15209 634 aa19.56■□□□□ 0.72
SYNE1-232ENST00000535081 POTEHQ6S545 545 aa19.56■□□□□ 0.72
SYNE1-232ENST00000535081 RBM42Q9BTD8 480 aaKnown RBP19.53■□□□□ 0.72
SYNE1-232ENST00000535081 ZBTB12Q9Y330 459 aaPredicted RBP19.32■□□□□ 0.68
SYNE1-232ENST00000535081 ATXN8OSP0DMR3 200 aa19.24■□□□□ 0.67
SYNE1-232ENST00000535081 OSCARQ8IYS5 282 aa19.09■□□□□ 0.65
SYNE1-232ENST00000535081 CHRDL2Q6WN34 429 aa19.08■□□□□ 0.64
SYNE1-232ENST00000535081 AKT1S1Q96B36 256 aa19.06■□□□□ 0.64
SYNE1-232ENST00000535081 REM2Q8IYK8 340 aaPredicted RBP18.88■□□□□ 0.61
SYNE1-232ENST00000535081 FBLN2P98095 1184 aa18.84■□□□□ 0.61
SYNE1-232ENST00000535081 SPDYE2BA6NHP3 402 aa18.71■□□□□ 0.59
SYNE1-232ENST00000535081 SPDYE6P0CI01 402 aa18.71■□□□□ 0.59
SYNE1-232ENST00000535081 SPDYE2Q495Y8 402 aa18.71■□□□□ 0.59
SYNE1-232ENST00000535081 PITPNM1O00562 1244 aa18.69■□□□□ 0.58
SYNE1-232ENST00000535081 MKRN4PQ13434 485 aaPredicted RBP18.69■□□□□ 0.58
SYNE1-232ENST00000535081 CSRNP3Q8WYN3 585 aa18.65■□□□□ 0.58
SYNE1-232ENST00000535081 PIP4P2Q8N4L2 257 aa18.63■□□□□ 0.57
SYNE1-232ENST00000535081 FXR2P51116 673 aaKnown RBP eCLIP18.51■□□□□ 0.55
SYNE1-232ENST00000535081 ZNF692Q9BU19 519 aaPredicted RBP18.48■□□□□ 0.55
SYNE1-232ENST00000535081 SSUH2Q9Y2M2 353 aa18.47■□□□□ 0.55
SYNE1-232ENST00000535081 EHMT2Q96KQ7 1210 aa18.44■□□□□ 0.54
SYNE1-232ENST00000535081 SPDYE1Q8NFV5 336 aaPredicted RBP18.38■□□□□ 0.53
SYNE1-232ENST00000535081 SP7Q8TDD2 431 aaPredicted RBP18.35■□□□□ 0.53
SYNE1-232ENST00000535081 CLEC11AQ9Y240 323 aa18.35■□□□□ 0.53
SYNE1-232ENST00000535081 HAX1O00165 279 aa18.28■□□□□ 0.52
SYNE1-232ENST00000535081 PABPN1Q86U42 306 aaKnown RBP eCLIP18.21■□□□□ 0.51
SYNE1-232ENST00000535081 PRKAR2AP13861 404 aaKnown RBP18.2■□□□□ 0.5
SYNE1-232ENST00000535081 PRR29P0C7W0 189 aa18.04■□□□□ 0.48
SYNE1-232ENST00000535081 EVX2Q03828 476 aa18.03■□□□□ 0.48
SYNE1-232ENST00000535081 CHADLQ6NUI6 762 aa18■□□□□ 0.47
SYNE1-232ENST00000535081 C19orf67A6NJJ6 358 aa17.92■□□□□ 0.46
SYNE1-232ENST00000535081 SPDYE4A6NLX3 237 aa17.81■□□□□ 0.44
SYNE1-232ENST00000535081 STAG3Q9UJ98 1225 aa17.72■□□□□ 0.43
SYNE1-232ENST00000535081 FARP1Q9Y4F1 1045 aaPredicted RBP17.72■□□□□ 0.43
SYNE1-232ENST00000535081 GABBR2O75899 941 aa17.65■□□□□ 0.42
SYNE1-232ENST00000535081 CD44P16070 742 aaKnown RBP17.63■□□□□ 0.41
SYNE1-232ENST00000535081 CREBZFQ9NS37 354 aa17.6■□□□□ 0.41
SYNE1-232ENST00000535081 PROM2Q8N271 834 aa17.39■□□□□ 0.37
SYNE1-232ENST00000535081 CLCN6P51797 869 aa17.38■□□□□ 0.37
SYNE1-232ENST00000535081 ZRANB1Q9UGI0 708 aa17.38■□□□□ 0.37
SYNE1-232ENST00000535081 ZNF579Q8NAF0 562 aaKnown RBP17.36■□□□□ 0.37
SYNE1-232ENST00000535081 MNX1P50219 401 aaPredicted RBP17.29■□□□□ 0.36
SYNE1-232ENST00000535081 NPM1P06748 294 aaKnown RBP eCLIP17.28■□□□□ 0.36
SYNE1-232ENST00000535081 POTEIP0CG38 1075 aa17.27■□□□□ 0.36
SYNE1-232ENST00000535081 PAK3O75914 559 aaPredicted RBP17.25■□□□□ 0.35
SYNE1-232ENST00000535081 LHX8Q68G74 356 aa17.19■□□□□ 0.34
SYNE1-232ENST00000535081 DCBLD2Q96PD2 775 aa17.19■□□□□ 0.34
SYNE1-232ENST00000535081 GALR2O43603 387 aaPredicted RBP17.14■□□□□ 0.33
SYNE1-232ENST00000535081 PHF12Q96QT6 1004 aa17.13■□□□□ 0.33
SYNE1-232ENST00000535081 PLEKHG5O94827 1062 aa17■□□□□ 0.31
SYNE1-232ENST00000535081 MIER1Q8N108 512 aa16.98■□□□□ 0.31
SYNE1-232ENST00000535081 TSPYL2Q9H2G4 693 aaPredicted RBP16.96■□□□□ 0.31
SYNE1-232ENST00000535081 FKBP8Q14318 412 aa16.94■□□□□ 0.3
SYNE1-232ENST00000535081 MS4A3Q96HJ5 214 aa16.92■□□□□ 0.3
SYNE1-232ENST00000535081 CCDC61Q9Y6R9 512 aa16.89■□□□□ 0.29
SYNE1-232ENST00000535081 PLCD3Q8N3E9 789 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms