RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 ZSCAN16Q9H4T2 348 aaPredicted RBP16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 RNF113AO15541 343 aaKnown RBP16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 FERMT1Q9BQL6 677 aa16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 UFL1O94874 794 aa16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 CAVIN2O95810 425 aa16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 LDHBP07195 334 aaKnown RBP16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 RBM25P49756 843 aaKnown RBP16.93■□□□□ 0.3
PCDHA9-202ENST00000532602 TAF5LO75529 589 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 ANKRD2Q9GZV1 360 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 MAGI3Q5TCQ9 1506 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 TIMM10P62072 90 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 MAP9Q49MG5 647 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 RMND1Q9NWS8 449 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 ARHGEF12Q9NZN5 1544 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 CCDC172P0C7W6 258 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 TNNT1P13805 278 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 GNAT2P19087 354 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 PTPN14Q15678 1187 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 KIF4BQ2VIQ3 1234 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 STK32BQ9NY57 414 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 SAMD9Q5K651 1589 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 PRC1O43663 620 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 CCDC129Q6ZRS4 1044 aa16.92■□□□□ 0.3
PCDHA9-202ENST00000532602 NEMFO60524 1076 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 MACROD2A1Z1Q3 448 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 MSL1Q68DK7 614 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 CCDC102AQ96A19 550 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 BICD1Q96G01 975 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 CFAP74Q9C0B2 1584 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 TMEM2Q9UHN6 1383 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 USP8P40818 1118 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 AFMP43652 599 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 APOBRQ0VD83 1088 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 TAOK3Q9H2K8 898 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 APBA3O96018 575 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 CTNNBL1Q8WYA6 563 aaPredicted RBP16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 ALS2CR12Q96Q35 445 aa16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 DDX21Q9NR30 783 aaKnown RBP eCLIP16.91■□□□□ 0.3
PCDHA9-202ENST00000532602 STX1AQ16623 288 aa16.9■□□□□ 0.3
PCDHA9-202ENST00000532602 PLBD2Q8NHP8 589 aa16.9■□□□□ 0.3
PCDHA9-202ENST00000532602 PIK3C2GO75747 1445 aa16.9■□□□□ 0.3
PCDHA9-202ENST00000532602 NAPAP54920 295 aa16.9■□□□□ 0.3
PCDHA9-202ENST00000532602 TBC1D32Q96NH3 1257 aa16.9■□□□□ 0.3
PCDHA9-202ENST00000532602 CHD1O14646 1710 aa16.9■□□□□ 0.3
PCDHA9-202ENST00000532602 CALM1P0DP23 149 aa16.9■□□□□ 0.3
PCDHA9-202ENST00000532602 CALM2P0DP24 149 aa16.9■□□□□ 0.3
PCDHA9-202ENST00000532602 CALM3P0DP25 149 aa16.9■□□□□ 0.3
PCDHA9-202ENST00000532602 GSDMDP57764 484 aa16.9■□□□□ 0.3
PCDHA9-202ENST00000532602 TAF3Q5VWG9 929 aa16.89■□□□□ 0.29
PCDHA9-202ENST00000532602 KIF18AQ8NI77 898 aa16.89■□□□□ 0.29
PCDHA9-202ENST00000532602 CNPY2Q9Y2B0 182 aa16.89■□□□□ 0.29
PCDHA9-202ENST00000532602 PPM1FP49593 454 aaPredicted RBP16.89■□□□□ 0.29
PCDHA9-202ENST00000532602 VTI1AQ96AJ9 217 aa16.89■□□□□ 0.29
PCDHA9-202ENST00000532602 TARBP1Q13395 1621 aaKnown RBP16.89■□□□□ 0.29
PCDHA9-202ENST00000532602 USP19O94966 1318 aa16.89■□□□□ 0.29
PCDHA9-202ENST00000532602 MARCKSP29966 332 aaPredicted RBP16.89■□□□□ 0.29
PCDHA9-202ENST00000532602 METTL22Q9BUU2 404 aaPredicted RBP16.89■□□□□ 0.29
PCDHA9-202ENST00000532602 EXOC1Q9NV70 894 aa16.89■□□□□ 0.29
PCDHA9-202ENST00000532602 NDUFB9Q9Y6M9 179 aa16.89■□□□□ 0.29
PCDHA9-202ENST00000532602 DNAJC10Q8IXB1 793 aa16.89■□□□□ 0.29
PCDHA9-202ENST00000532602 HSP90AA4PQ58FG1 418 aa16.88■□□□□ 0.29
PCDHA9-202ENST00000532602 SMARCC2Q8TAQ2 1214 aa16.88■□□□□ 0.29
PCDHA9-202ENST00000532602 CLIP2Q9UDT6 1046 aa16.88■□□□□ 0.29
PCDHA9-202ENST00000532602 NAA15Q9BXJ9 866 aaKnown RBP16.88■□□□□ 0.29
PCDHA9-202ENST00000532602 SOS1Q07889 1333 aaPredicted RBP16.88■□□□□ 0.29
PCDHA9-202ENST00000532602 C6orf50Q9HD87 102 aa16.88■□□□□ 0.29
PCDHA9-202ENST00000532602 ADGRL2O95490 1459 aa16.88■□□□□ 0.29
PCDHA9-202ENST00000532602 MBD4O95243 580 aa16.88■□□□□ 0.29
PCDHA9-202ENST00000532602 EIF6P56537 245 aaKnown RBP16.88■□□□□ 0.29
PCDHA9-202ENST00000532602 PDCL2Q8N4E4 241 aa16.88■□□□□ 0.29
PCDHA9-202ENST00000532602 DYDC1Q8WWB3 177 aa16.88■□□□□ 0.29
PCDHA9-202ENST00000532602 PER1O15534 1290 aaPredicted RBP16.87■□□□□ 0.29
PCDHA9-202ENST00000532602 A0A1B0GUL7 405 aa16.87■□□□□ 0.29
PCDHA9-202ENST00000532602 TRIM35Q9UPQ4 493 aa16.87■□□□□ 0.29
PCDHA9-202ENST00000532602 RAB3GAP1Q15042 981 aa16.87■□□□□ 0.29
PCDHA9-202ENST00000532602 CCDC87Q9NVE4 849 aa16.87■□□□□ 0.29
PCDHA9-202ENST00000532602 ESPNB1AK53 854 aa16.87■□□□□ 0.29
PCDHA9-202ENST00000532602 TNNI2P48788 182 aa16.87■□□□□ 0.29
PCDHA9-202ENST00000532602 USP25Q9UHP3 1055 aa16.87■□□□□ 0.29
PCDHA9-202ENST00000532602 CASQ1P31415 396 aa16.87■□□□□ 0.29
PCDHA9-202ENST00000532602 TMCO3Q6UWJ1 677 aa16.87■□□□□ 0.29
PCDHA9-202ENST00000532602 LMOD1P29536 600 aaPredicted RBP16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 ACTN2P35609 894 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 ARMT1Q9H993 441 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 ZNF408Q9H9D4 720 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 KCNQ3O43525 872 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 CALML3P27482 149 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 CREB3L3Q68CJ9 461 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 ZBTB21Q9ULJ3 1066 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 GOLGA6L9A6NEM1 432 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 ZSCAN30Q86W11 494 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 ZBTB40Q9NUA8 1239 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 KDM5AP29375 1690 aaKnown RBP16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 CA8P35219 290 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 TRIM47Q96LD4 638 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 PUF60Q9UHX1 559 aaKnown RBP16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 GCOM1H8Y6P7 765 aaPredicted RBP16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 MYZAPP0CAP1 466 aa16.86■□□□□ 0.29
PCDHA9-202ENST00000532602 ZSCAN22P10073 491 aaPredicted RBP16.86■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms