RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 PITPNM2Q9BZ72 1349 aa10.95□□□□□ -0.66
CD44-232ENST00000531118 G3V3G9 751 aa10.95□□□□□ -0.66
CD44-232ENST00000531118 TM4SF4P48230 202 aa10.95□□□□□ -0.66
CD44-232ENST00000531118 SREBF2Q12772 1141 aa10.95□□□□□ -0.66
CD44-232ENST00000531118 CC2D1BQ5T0F9 858 aaKnown RBP10.95□□□□□ -0.66
CD44-232ENST00000531118 INTS3Q68E01 1043 aaKnown RBP10.95□□□□□ -0.66
CD44-232ENST00000531118 DDX46Q7L014 1031 aaKnown RBP10.95□□□□□ -0.66
CD44-232ENST00000531118 TMC4Q7Z404 712 aa10.95□□□□□ -0.66
CD44-232ENST00000531118 R3HDMLQ9H3Y0 253 aa10.95□□□□□ -0.66
CD44-232ENST00000531118 TRIM17Q9Y577 477 aa10.95□□□□□ -0.66
CD44-232ENST00000531118 ERBB4Q15303 1308 aa10.94□□□□□ -0.66
CD44-232ENST00000531118 RIMBP2O15034 1052 aa10.94□□□□□ -0.66
CD44-232ENST00000531118 HCLS1P14317 486 aaPredicted RBP10.94□□□□□ -0.66
CD44-232ENST00000531118 WASHC4Q2M389 1173 aa10.94□□□□□ -0.66
CD44-232ENST00000531118 OTOP1Q7RTM1 612 aa10.94□□□□□ -0.66
CD44-232ENST00000531118 KCNQ5Q9NR82 932 aa10.94□□□□□ -0.66
CD44-232ENST00000531118 UBE2Q2LH0YL09 131 aa10.93□□□□□ -0.66
CD44-232ENST00000531118 PPP1R37O75864 691 aa10.93□□□□□ -0.66
CD44-232ENST00000531118 ZNF280AP59817 542 aaPredicted RBP10.93□□□□□ -0.66
CD44-232ENST00000531118 SCARF1Q14162 830 aa10.93□□□□□ -0.66
CD44-232ENST00000531118 ARMC5Q96C12 935 aa10.93□□□□□ -0.66
CD44-232ENST00000531118 OTOFQ9HC10 1997 aa10.93□□□□□ -0.66
CD44-232ENST00000531118 RANBP2P49792 3224 aaKnown RBP10.92□□□□□ -0.66
CD44-232ENST00000531118 VIL1P09327 827 aaKnown RBP10.92□□□□□ -0.66
CD44-232ENST00000531118 EN2P19622 333 aaPredicted RBP10.92□□□□□ -0.66
CD44-232ENST00000531118 TAF7Q15545 349 aaPredicted RBP10.92□□□□□ -0.66
CD44-232ENST00000531118 DOK7Q18PE1 504 aa10.92□□□□□ -0.66
CD44-232ENST00000531118 EYA3Q99504 573 aa10.92□□□□□ -0.66
CD44-232ENST00000531118 MIS18AQ9NYP9 233 aa10.92□□□□□ -0.66
CD44-232ENST00000531118 POLLQ9UGP5 575 aa10.92□□□□□ -0.66
CD44-232ENST00000531118 BOLA1Q9Y3E2 137 aa10.92□□□□□ -0.66
CD44-232ENST00000531118 ECM29Q5VYK3 1845 aa10.92□□□□□ -0.66
CD44-232ENST00000531118 SH3TC1Q8TE82 1336 aa10.91□□□□□ -0.66
CD44-232ENST00000531118 C6orf229H3BNL8 230 aa10.91□□□□□ -0.66
CD44-232ENST00000531118 HTATSF1O43719 755 aaKnown RBP10.91□□□□□ -0.66
CD44-232ENST00000531118 EIF4A1P60842 406 aaKnown RBP10.91□□□□□ -0.66
CD44-232ENST00000531118 GPSM2P81274 684 aa10.91□□□□□ -0.66
CD44-232ENST00000531118 TTLL12Q14166 644 aaPredicted RBP10.91□□□□□ -0.66
CD44-232ENST00000531118 LRP10Q7Z4F1 713 aa10.91□□□□□ -0.66
CD44-232ENST00000531118 NLRP10Q86W26 655 aa10.91□□□□□ -0.66
CD44-232ENST00000531118 CELF1Q92879 486 aaKnown RBP10.91□□□□□ -0.66
CD44-232ENST00000531118 TIMELESSQ9UNS1 1208 aa10.91□□□□□ -0.66
CD44-232ENST00000531118 NSFL1CQ9UNZ2 370 aaKnown RBP10.91□□□□□ -0.66
CD44-232ENST00000531118 SCAF8Q9UPN6 1271 aaKnown RBP10.91□□□□□ -0.66
CD44-232ENST00000531118 RSBN1LQ6PCB5 846 aaPredicted RBP10.9□□□□□ -0.66
CD44-232ENST00000531118 SLC17A8Q8NDX2 589 aa10.9□□□□□ -0.66
CD44-232ENST00000531118 AGBL3Q8NEM8 1001 aa10.9□□□□□ -0.66
CD44-232ENST00000531118 PNISRQ8TF01 805 aaKnown RBP10.9□□□□□ -0.66
CD44-232ENST00000531118 OTUD5Q96G74 571 aa10.9□□□□□ -0.66
CD44-232ENST00000531118 THUMPD2Q9BTF0 503 aaKnown RBP10.9□□□□□ -0.66
CD44-232ENST00000531118 TMEM121BQ9BXQ6 578 aaPredicted RBP10.9□□□□□ -0.66
CD44-232ENST00000531118 PTPN22Q9Y2R2 807 aa10.9□□□□□ -0.66
CD44-232ENST00000531118 ZSWIM8A7E2V4 1837 aa10.9□□□□□ -0.66
CD44-232ENST00000531118 SPEF2Q9C093 1822 aa10.9□□□□□ -0.66
CD44-232ENST00000531118 H0YGN5 161 aa10.89□□□□□ -0.67
CD44-232ENST00000531118 PER1O15534 1290 aaPredicted RBP10.89□□□□□ -0.67
CD44-232ENST00000531118 ALDH1A1P00352 501 aa10.89□□□□□ -0.67
CD44-232ENST00000531118 HSP90AB3PQ58FF7 597 aa10.89□□□□□ -0.67
CD44-232ENST00000531118 PRAMEF18Q5VWM3 479 aa10.89□□□□□ -0.67
CD44-232ENST00000531118 TBC1D16Q8TBP0 767 aa10.89□□□□□ -0.67
CD44-232ENST00000531118 CD99L2Q8TCZ2 262 aa10.89□□□□□ -0.67
CD44-232ENST00000531118 ERO1AQ96HE7 468 aa10.89□□□□□ -0.67
CD44-232ENST00000531118 MYOZ2Q9NPC6 264 aa10.89□□□□□ -0.67
CD44-232ENST00000531118 TRMT112Q9UI30 125 aaKnown RBP10.89□□□□□ -0.67
CD44-232ENST00000531118 COL1A1P02452 1464 aaPredicted RBP10.88□□□□□ -0.67
CD44-232ENST00000531118 TCIRG1Q13488 830 aa10.88□□□□□ -0.67
CD44-232ENST00000531118 PROSER3Q2NL68 480 aa10.88□□□□□ -0.67
CD44-232ENST00000531118 SPRYD7Q5W111 196 aa10.88□□□□□ -0.67
CD44-232ENST00000531118 ZNF333Q96JL9 665 aa10.88□□□□□ -0.67
CD44-232ENST00000531118 GMLQ99445 158 aa10.88□□□□□ -0.67
CD44-232ENST00000531118 COL6A3P12111 3177 aa10.88□□□□□ -0.67
CD44-232ENST00000531118 SSC5DA1L4H1 1573 aa10.87□□□□□ -0.67
CD44-232ENST00000531118 IGF2BP3O00425 579 aaKnown RBP eCLIP10.87□□□□□ -0.67
CD44-232ENST00000531118 UFL1O94874 794 aa10.87□□□□□ -0.67
CD44-232ENST00000531118 ANXA1P04083 346 aa10.87□□□□□ -0.67
CD44-232ENST00000531118 USP17L8P0C7I0 530 aa10.87□□□□□ -0.67
CD44-232ENST00000531118 U2AF1L5P0DN76 240 aaPredicted RBP10.87□□□□□ -0.67
CD44-232ENST00000531118 NF2P35240 595 aa10.87□□□□□ -0.67
CD44-232ENST00000531118 U2AF1Q01081 240 aaKnown RBP eCLIP10.87□□□□□ -0.67
CD44-232ENST00000531118 PTPN12Q05209 780 aaKnown RBP10.87□□□□□ -0.67
CD44-232ENST00000531118 PDIA6Q15084 440 aa10.87□□□□□ -0.67
CD44-232ENST00000531118 NECTIN2Q92692 538 aa10.87□□□□□ -0.67
CD44-232ENST00000531118 CFAP53Q96M91 514 aa10.87□□□□□ -0.67
CD44-232ENST00000531118 MANSC4A6NHS7 340 aaPredicted RBP10.86□□□□□ -0.67
CD44-232ENST00000531118 CNGB1Q14028 1251 aaPredicted RBP10.86□□□□□ -0.67
CD44-232ENST00000531118 ARMC9Q7Z3E5 817 aa10.86□□□□□ -0.67
CD44-232ENST00000531118 EFCC1Q9HA90 598 aa10.86□□□□□ -0.67
CD44-232ENST00000531118 RBM27Q9P2N5 1060 aaKnown RBP10.86□□□□□ -0.67
CD44-232ENST00000531118 NUDCQ9Y266 331 aa10.86□□□□□ -0.67
CD44-232ENST00000531118 LAMA3Q16787 3333 aa10.85□□□□□ -0.67
CD44-232ENST00000531118 CAP1Q01518 475 aa10.85□□□□□ -0.67
CD44-232ENST00000531118 PRKG1Q13976 671 aa10.85□□□□□ -0.67
CD44-232ENST00000531118 SF3B3Q15393 1217 aaKnown RBP10.85□□□□□ -0.67
CD44-232ENST00000531118 NBPF9Q3BBW0 867 aa10.85□□□□□ -0.67
CD44-232ENST00000531118 ZNF428Q96B54 188 aa10.85□□□□□ -0.67
CD44-232ENST00000531118 ZC3H12CQ9C0D7 883 aaKnown RBP10.85□□□□□ -0.67
CD44-232ENST00000531118 PODXL2Q9NZ53 605 aa10.85□□□□□ -0.67
CD44-232ENST00000531118 SASH1O94885 1247 aa10.84□□□□□ -0.67
CD44-232ENST00000531118 CRHR2Q13324 411 aa10.84□□□□□ -0.67
CD44-232ENST00000531118 LDLRAD1Q5T700 205 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms