RNA–Protein interactions for RNA: ENST00000512820.5

LIMCH1-216, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,071 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-216ENST00000512820 RAD21O60216 631 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 TUBB4AP04350 444 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 GTF3C6Q969F1 213 aa9.7□□□□□ -0.86
LIMCH1-216ENST00000512820 IGSF1Q8N6C5 1336 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 ZNF790Q6PG37 636 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 ZSWIM4Q9H7M6 989 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 TRMT112Q9UI30 125 aaKnown RBP9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 IQGAP1P46940 1657 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 LRRC7Q96NW7 1537 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 TMEM2Q9UHN6 1383 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 BRAPQ7Z569 592 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 CCDC12Q8WUD4 166 aaPredicted RBP9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 ERO1AQ96HE7 468 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 TRERF1Q96PN7 1200 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 GBP3Q9H0R5 595 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 QRICH2Q9H0J4 1663 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 LARGE1O95461 756 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 GCKRQ14397 625 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 MAP4K1Q92918 833 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 CHD1O14646 1710 aa9.69□□□□□ -0.86
LIMCH1-216ENST00000512820 HSP90AB3PQ58FF7 597 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 OTUD7BQ6GQQ9 843 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 NAA16Q6N069 864 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 G3V3G9 751 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 IGHMBP2P38935 993 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 DCAF8Q5TAQ9 597 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 KBTBD3Q8NAB2 608 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 PI4K2BQ8TCG2 481 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 MRVI1Q9Y6F6 885 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 GIGYF1O75420 1035 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 LTKP29376 864 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 EIF5P55010 431 aaKnown RBP9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 ATP2B3Q16720 1220 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 ATP5JP18859 108 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 KANK3Q6NY19 840 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 KIAA1328Q86T90 577 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 CCDC148Q8NFR7 591 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 DEF6Q9H4E7 631 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 RNF41Q9H4P4 317 aaPredicted RBP9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 NCOA3Q9Y6Q9 1424 aa9.68□□□□□ -0.86
LIMCH1-216ENST00000512820 SLC9C2Q5TAH2 1124 aa9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 MFSD6Q6ZSS7 791 aa9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 TMEM87AQ8NBN3 555 aa9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 CDK5RAP3Q96JB5 506 aa9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 SRRTQ9BXP5 876 aaKnown RBP9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 SLC5A1P13866 664 aa9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 FAM193AP78312 1265 aa9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 KIAA1524Q8TCG1 905 aa9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 NUP88Q99567 741 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 POLA2Q14181 598 aa9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 TMX4Q9H1E5 349 aaPredicted RBP9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 KDRP35968 1356 aa9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 PDE4CQ08493 712 aa9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 ARHGAP31Q2M1Z3 1444 aa9.67□□□□□ -0.86
LIMCH1-216ENST00000512820 RANBP6O60518 1105 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 RXRAP19793 462 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 UTP14AQ9BVJ6 771 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 NLRP1Q9C000 1473 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 USP6P35125 1406 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 HECW2Q9P2P5 1572 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 EPS15P42566 896 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 CCDC181Q5TID7 509 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 SEC62Q99442 399 aaKnown RBP9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 ARFGAP3Q9NP61 516 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 NRBP1Q9UHY1 535 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 ROBO2Q9HCK4 1378 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 CFAP74Q9C0B2 1584 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 ELP1O95163 1332 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 A0A1B0GUL7 405 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 NEURL1BA8MQ27 555 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 MYL5Q02045 173 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 ELF2Q15723 593 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 ANO1Q5XXA6 986 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 TIGD1Q96MW7 591 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 DCAF5Q96JK2 942 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 USP28Q96RU2 1077 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 CEP89Q96ST8 783 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 PODXL2Q9NZ53 605 aa9.66□□□□□ -0.86
LIMCH1-216ENST00000512820 POTEB2H3BUK9 544 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 EYA2O00167 538 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 AFMP43652 599 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 PROSER3Q2NL68 480 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 IQCA1Q86XH1 822 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 CTCFLQ8NI51 663 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 TLR7Q9NYK1 1049 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 CEP152O94986 1710 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 WTAPQ15007 396 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 TAF5LO75529 589 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 ZNF202O95125 648 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 KIF20AO95235 890 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 YEATS4O95619 227 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 UQCRFS1P1P0C7P4 283 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 FANCCQ00597 558 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 MAPK8IP2Q13387 824 aaPredicted RBP9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 IQCEQ6IPM2 695 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 CATIPQ7Z7H3 387 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 TDRD7Q8NHU6 1098 aaKnown RBP9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 CRACR2AQ9BSW2 395 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 IMPACTQ9P2X3 320 aa9.65□□□□□ -0.86
LIMCH1-216ENST00000512820 H0YHG0 523 aa9.65□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms