RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 ABCC10Q5T3U5 1492 aa7.37□□□□□ -1.23
NUP54-206ENST00000508465 GLB1P16278 677 aa7.37□□□□□ -1.23
NUP54-206ENST00000508465 WEE1P30291 646 aa7.37□□□□□ -1.23
NUP54-206ENST00000508465 RGL4Q8IZJ4 473 aa7.37□□□□□ -1.23
NUP54-206ENST00000508465 PPP1R12CQ9BZL4 782 aa7.37□□□□□ -1.23
NUP54-206ENST00000508465 RAXQ9Y2V3 346 aa7.37□□□□□ -1.23
NUP54-206ENST00000508465 CTTNBP2Q8WZ74 1663 aa7.37□□□□□ -1.23
NUP54-206ENST00000508465 SOX18P35713 384 aa7.36□□□□□ -1.23
NUP54-206ENST00000508465 IRAK1P51617 712 aa7.36□□□□□ -1.23
NUP54-206ENST00000508465 CALR3Q96L12 384 aaKnown RBP7.36□□□□□ -1.23
NUP54-206ENST00000508465 STOML1Q9UBI4 398 aa7.36□□□□□ -1.23
NUP54-206ENST00000508465 USP20Q9Y2K6 914 aa7.36□□□□□ -1.23
NUP54-206ENST00000508465 UHRF1BP1LA0JNW5 1464 aa7.36□□□□□ -1.23
NUP54-206ENST00000508465 MMP20O60882 483 aa7.35□□□□□ -1.23
NUP54-206ENST00000508465 COBLO75128 1261 aa7.35□□□□□ -1.23
NUP54-206ENST00000508465 CD97P48960 835 aa7.35□□□□□ -1.23
NUP54-206ENST00000508465 SETDB1Q15047 1291 aa7.35□□□□□ -1.23
NUP54-206ENST00000508465 PROSER2Q86WR7 435 aaPredicted RBP7.35□□□□□ -1.23
NUP54-206ENST00000508465 TREML1Q86YW5 311 aa7.35□□□□□ -1.23
NUP54-206ENST00000508465 KRTAP19-1Q8IUB9 90 aa7.35□□□□□ -1.23
NUP54-206ENST00000508465 NSUN5Q96P11 429 aaKnown RBP7.35□□□□□ -1.23
NUP54-206ENST00000508465 PPME1Q9Y570 386 aa7.35□□□□□ -1.23
NUP54-206ENST00000508465 FHOD3Q2V2M9 1422 aa7.35□□□□□ -1.23
NUP54-206ENST00000508465 KIF13AQ9H1H9 1805 aa7.34□□□□□ -1.23
NUP54-206ENST00000508465 MAPKBP1O60336 1514 aa7.34□□□□□ -1.23
NUP54-206ENST00000508465 LOC105371045A0A1W2PR82 267 aa7.34□□□□□ -1.23
NUP54-206ENST00000508465 DHX15O43143 795 aaKnown RBP7.34□□□□□ -1.23
NUP54-206ENST00000508465 IGLV1-40P01703 118 aa7.34□□□□□ -1.23
NUP54-206ENST00000508465 LMOD1P29536 600 aaPredicted RBP7.34□□□□□ -1.23
NUP54-206ENST00000508465 KDM5BQ9UGL1 1544 aa7.33□□□□□ -1.24
NUP54-206ENST00000508465 TSPOAP1O95153 1857 aa7.33□□□□□ -1.24
NUP54-206ENST00000508465 HOXD8P13378 290 aaPredicted RBP7.33□□□□□ -1.24
NUP54-206ENST00000508465 Q6ZS46 218 aa7.33□□□□□ -1.24
NUP54-206ENST00000508465 AGGF1Q8N302 714 aaeCLIP7.33□□□□□ -1.24
NUP54-206ENST00000508465 FNBP4Q8N3X1 1017 aaPredicted RBP7.33□□□□□ -1.24
NUP54-206ENST00000508465 FAM200AQ8TCP9 573 aa7.33□□□□□ -1.24
NUP54-206ENST00000508465 CEP41Q9BYV8 373 aa7.33□□□□□ -1.24
NUP54-206ENST00000508465 ATP10BO94823 1461 aa7.32□□□□□ -1.24
NUP54-206ENST00000508465 KIF21BO75037 1637 aa7.32□□□□□ -1.24
NUP54-206ENST00000508465 NLRP13Q86W25 1043 aa7.32□□□□□ -1.24
NUP54-206ENST00000508465 CLUAP1Q96AJ1 413 aa7.32□□□□□ -1.24
NUP54-206ENST00000508465 SPACA7Q96KW9 195 aa7.32□□□□□ -1.24
NUP54-206ENST00000508465 LRFN2Q9ULH4 789 aa7.32□□□□□ -1.24
NUP54-206ENST00000508465 KCNMB2Q9Y691 235 aa7.32□□□□□ -1.24
NUP54-206ENST00000508465 ABCA8O94911 1581 aa7.32□□□□□ -1.24
NUP54-206ENST00000508465 DIP2BQ9P265 1576 aa7.32□□□□□ -1.24
NUP54-206ENST00000508465 ZCCHC11Q5TAX3 1644 aaKnown RBP7.31□□□□□ -1.24
NUP54-206ENST00000508465 GRIK1P39086 918 aa7.31□□□□□ -1.24
NUP54-206ENST00000508465 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.31□□□□□ -1.24
NUP54-206ENST00000508465 ARXQ96QS3 562 aa7.31□□□□□ -1.24
NUP54-206ENST00000508465 KRTAP9-9Q9BYP9 154 aa7.31□□□□□ -1.24
NUP54-206ENST00000508465 KRTAP9-4Q9BYQ2 154 aa7.31□□□□□ -1.24
NUP54-206ENST00000508465 TRIM33Q9UPN9 1127 aa7.31□□□□□ -1.24
NUP54-206ENST00000508465 EPRSP07814 1512 aaKnown RBP7.31□□□□□ -1.24
NUP54-206ENST00000508465 YBX3P16989 372 aaKnown RBP eCLIP7.3□□□□□ -1.241e-7■■■■□ 22.1
NUP54-206ENST00000508465 BRD2P25440 801 aaKnown RBP7.3□□□□□ -1.24
NUP54-206ENST00000508465 INTS5Q6P9B9 1019 aaKnown RBP7.3□□□□□ -1.24
NUP54-206ENST00000508465 FMNL2Q96PY5 1086 aa7.3□□□□□ -1.24
NUP54-206ENST00000508465 UBL7Q96S82 380 aaPredicted RBP7.3□□□□□ -1.24
NUP54-206ENST00000508465 FAM13BQ9NYF5 915 aa7.3□□□□□ -1.24
NUP54-206ENST00000508465 SAMD9Q5K651 1589 aa7.29□□□□□ -1.24
NUP54-206ENST00000508465 PLEKHD1A6NEE1 506 aa7.29□□□□□ -1.24
NUP54-206ENST00000508465 KIAA1324LA8MWY0 1029 aaPredicted RBP7.29□□□□□ -1.24
NUP54-206ENST00000508465 LINC01387J3KSC0 135 aa7.29□□□□□ -1.24
NUP54-206ENST00000508465 SMNDC1O75940 238 aaKnown RBP eCLIP7.29□□□□□ -1.24
NUP54-206ENST00000508465 TGFB1P01137 390 aa7.29□□□□□ -1.24
NUP54-206ENST00000508465 TAL1P17542 331 aaPredicted RBP7.29□□□□□ -1.24
NUP54-206ENST00000508465 CD68P34810 354 aaPredicted RBP7.29□□□□□ -1.24
NUP54-206ENST00000508465 GP2P55259 537 aaKnown RBP7.29□□□□□ -1.24
NUP54-206ENST00000508465 UVSSAQ2YD98 709 aa7.29□□□□□ -1.24
NUP54-206ENST00000508465 COX20Q5RI15 118 aa7.29□□□□□ -1.24
NUP54-206ENST00000508465 FAM117BQ6P1L5 589 aa7.29□□□□□ -1.24
NUP54-206ENST00000508465 WDR7Q9Y4E6 1490 aa7.29□□□□□ -1.24
NUP54-206ENST00000508465 CD109Q6YHK3 1445 aa7.28□□□□□ -1.24
NUP54-206ENST00000508465 FAM177BA6PVY3 158 aa7.28□□□□□ -1.24
NUP54-206ENST00000508465 NFIAQ12857 509 aa7.28□□□□□ -1.24
NUP54-206ENST00000508465 HYAL2Q12891 473 aa7.28□□□□□ -1.24
NUP54-206ENST00000508465 ACAD11Q709F0 780 aa7.28□□□□□ -1.24
NUP54-206ENST00000508465 PIK3R5Q8WYR1 880 aa7.28□□□□□ -1.24
NUP54-206ENST00000508465 UTP4Q969X6 686 aaKnown RBP7.28□□□□□ -1.24
NUP54-206ENST00000508465 UBAP1LF5GYI3 381 aa7.27□□□□□ -1.25
NUP54-206ENST00000508465 MED26O95402 600 aa7.27□□□□□ -1.25
NUP54-206ENST00000508465 RFX1P22670 979 aa7.27□□□□□ -1.25
NUP54-206ENST00000508465 CDC27P30260 824 aa7.27□□□□□ -1.25
NUP54-206ENST00000508465 TTC39BQ5VTQ0 682 aaPredicted RBP7.27□□□□□ -1.25
NUP54-206ENST00000508465 CEP135Q66GS9 1140 aa7.27□□□□□ -1.25
NUP54-206ENST00000508465 GALNT11Q8NCW6 608 aa7.27□□□□□ -1.25
NUP54-206ENST00000508465 OR13H1Q8NG92 308 aa7.27□□□□□ -1.25
NUP54-206ENST00000508465 FNDC3AQ9Y2H6 1198 aaKnown RBP7.27□□□□□ -1.25
NUP54-206ENST00000508465 OAS3Q9Y6K5 1087 aaKnown RBP7.27□□□□□ -1.25
NUP54-206ENST00000508465 NUP153P49790 1475 aaKnown RBP7.27□□□□□ -1.25
NUP54-206ENST00000508465 ARHGAP35Q9NRY4 1499 aa7.27□□□□□ -1.25
NUP54-206ENST00000508465 GLI2P10070 1586 aa7.26□□□□□ -1.25
NUP54-206ENST00000508465 SCNN1AP37088 669 aa7.26□□□□□ -1.25
NUP54-206ENST00000508465 DUOXA2Q1HG44 320 aa7.26□□□□□ -1.25
NUP54-206ENST00000508465 ZDHHC13Q8IUH4 622 aa7.26□□□□□ -1.25
NUP54-206ENST00000508465 ARMC10Q8N2F6 343 aa7.26□□□□□ -1.25
NUP54-206ENST00000508465 KLHL23Q8NBE8 558 aa7.26□□□□□ -1.25
NUP54-206ENST00000508465 LACRTQ9GZZ8 138 aa7.26□□□□□ -1.25
NUP54-206ENST00000508465 RAPGEF6Q8TEU7 1601 aa7.26□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms