RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 ZNF75DP51815 510 aa14.63□□□□□ -0.07
HDAC4-208ENST00000463007 CABP4P57796 275 aa14.63□□□□□ -0.07
HDAC4-208ENST00000463007 PTPN21Q16825 1174 aa14.62□□□□□ -0.07
HDAC4-208ENST00000463007 C11orf57Q6ZUT1 292 aaPredicted RBP14.62□□□□□ -0.07
HDAC4-208ENST00000463007 CARD10Q9BWT7 1032 aa14.62□□□□□ -0.07
HDAC4-208ENST00000463007 LRP6O75581 1613 aa14.62□□□□□ -0.07
HDAC4-208ENST00000463007 BIN1O00499 593 aa14.62□□□□□ -0.07
HDAC4-208ENST00000463007 ZBTB22O15209 634 aa14.62□□□□□ -0.07
HDAC4-208ENST00000463007 GTF2F1P35269 517 aaKnown RBP eCLIP14.62□□□□□ -0.07
HDAC4-208ENST00000463007 FOXO4P98177 505 aa14.62□□□□□ -0.07
HDAC4-208ENST00000463007 MAP4K1Q92918 833 aa14.62□□□□□ -0.07
HDAC4-208ENST00000463007 TRERF1Q96PN7 1200 aa14.62□□□□□ -0.07
HDAC4-208ENST00000463007 H7C1W4 665 aa14.61□□□□□ -0.07
HDAC4-208ENST00000463007 NCOA5Q9HCD5 579 aaKnown RBP14.61□□□□□ -0.07
HDAC4-208ENST00000463007 SLAIN2Q9P270 581 aa14.61□□□□□ -0.07
HDAC4-208ENST00000463007 SPEF2Q9C093 1822 aa14.61□□□□□ -0.07
HDAC4-208ENST00000463007 COL22A1Q8NFW1 1626 aaPredicted RBP14.61□□□□□ -0.07
HDAC4-208ENST00000463007 ZCRB1Q8TBF4 217 aaKnown RBP14.61□□□□□ -0.07
HDAC4-208ENST00000463007 DBNLQ9UJU6 430 aaKnown RBP14.61□□□□□ -0.07
HDAC4-208ENST00000463007 DISP2A7MBM2 1401 aa14.61□□□□□ -0.07
HDAC4-208ENST00000463007 CEP135Q66GS9 1140 aa14.61□□□□□ -0.07
HDAC4-208ENST00000463007 DDX46Q7L014 1031 aaKnown RBP14.61□□□□□ -0.07
HDAC4-208ENST00000463007 COL16A1Q07092 1604 aaPredicted RBP14.6□□□□□ -0.07
HDAC4-208ENST00000463007 SKILP12757 684 aa14.6□□□□□ -0.07
HDAC4-208ENST00000463007 PDCP20941 246 aa14.6□□□□□ -0.07
HDAC4-208ENST00000463007 PSMA5P28066 241 aa14.6□□□□□ -0.07
HDAC4-208ENST00000463007 Q6ZUG5 572 aa14.6□□□□□ -0.07
HDAC4-208ENST00000463007 SCAND2PQ9GZW5 306 aaPredicted RBP14.6□□□□□ -0.07
HDAC4-208ENST00000463007 ST7Q9NRC1 585 aa14.6□□□□□ -0.07
HDAC4-208ENST00000463007 ZNF335Q9H4Z2 1342 aaPredicted RBP14.6□□□□□ -0.07
HDAC4-208ENST00000463007 ME1P48163 572 aa14.6□□□□□ -0.07
HDAC4-208ENST00000463007 RNF20Q5VTR2 975 aa14.6□□□□□ -0.07
HDAC4-208ENST00000463007 ZNF215Q9UL58 517 aaPredicted RBP14.6□□□□□ -0.07
HDAC4-208ENST00000463007 ATP5JP18859 108 aa14.59□□□□□ -0.07
HDAC4-208ENST00000463007 TOB2Q14106 344 aaPredicted RBP14.59□□□□□ -0.07
HDAC4-208ENST00000463007 OTUD7BQ6GQQ9 843 aa14.59□□□□□ -0.07
HDAC4-208ENST00000463007 ANKRD36CQ5JPF3 1778 aa14.59□□□□□ -0.07
HDAC4-208ENST00000463007 LAMA4Q16363 1823 aa14.59□□□□□ -0.07
HDAC4-208ENST00000463007 TNNI3KQ59H18 835 aa14.59□□□□□ -0.07
HDAC4-208ENST00000463007 UBE3BQ7Z3V4 1068 aa14.59□□□□□ -0.07
HDAC4-208ENST00000463007 PRDM11Q9NQV5 511 aa14.59□□□□□ -0.07
HDAC4-208ENST00000463007 FPGT-TNNI3KV9GXZ4 949 aa14.59□□□□□ -0.07
HDAC4-208ENST00000463007 HIP1O00291 1037 aa14.59□□□□□ -0.07
HDAC4-208ENST00000463007 CCAR1Q8IX12 1150 aaKnown RBP14.59□□□□□ -0.07
HDAC4-208ENST00000463007 COL14A1Q05707 1796 aaKnown RBP14.58□□□□□ -0.08
HDAC4-208ENST00000463007 TPM3P06753 285 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 RPS6KB1P23443 525 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 USPL1Q5W0Q7 1092 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 FAM177A1Q8N128 213 aaPredicted RBP14.58□□□□□ -0.08
HDAC4-208ENST00000463007 STK11IPQ8N1F8 1099 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 NEUROD6Q96NK8 337 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 SDF4Q9BRK5 362 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 TMX1Q9H3N1 280 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 IL2RBP14784 551 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 PTPN14Q15678 1187 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 ELF2Q15723 593 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 TSGA10IPQ3SY00 556 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 TTLL7Q6ZT98 887 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 ATG9AQ7Z3C6 839 aa14.58□□□□□ -0.08
HDAC4-208ENST00000463007 A0A0G2JLW4 131 aa14.57□□□□□ -0.08
HDAC4-208ENST00000463007 KDM4FA0A1W2PPD8 638 aa14.57□□□□□ -0.08
HDAC4-208ENST00000463007 HSP90AA4PQ58FG1 418 aa14.57□□□□□ -0.08
HDAC4-208ENST00000463007 ALDH8A1Q9H2A2 487 aaPredicted RBP14.57□□□□□ -0.08
HDAC4-208ENST00000463007 CLSTN2Q9H4D0 955 aa14.57□□□□□ -0.08
HDAC4-208ENST00000463007 ZNF609O15014 1411 aa14.57□□□□□ -0.08
HDAC4-208ENST00000463007 ATP5J2-PTCD1G3V325 749 aa14.57□□□□□ -0.08
HDAC4-208ENST00000463007 PTCD1O75127 700 aaKnown RBP14.57□□□□□ -0.08
HDAC4-208ENST00000463007 APOBRQ0VD83 1088 aa14.57□□□□□ -0.08
HDAC4-208ENST00000463007 TFCP2Q12800 502 aa14.57□□□□□ -0.08
HDAC4-208ENST00000463007 AOPEPQ8N6M6 819 aa14.57□□□□□ -0.08
HDAC4-208ENST00000463007 DDX60Q8IY21 1712 aaKnown RBP14.57□□□□□ -0.08
HDAC4-208ENST00000463007 A0A087WZG4 1122 aa14.57□□□□□ -0.08
HDAC4-208ENST00000463007 SMC2O95347 1197 aa14.57□□□□□ -0.08
HDAC4-208ENST00000463007 POLR3DP05423 398 aaPredicted RBP14.57□□□□□ -0.08
HDAC4-208ENST00000463007 ZRSR1Q15695 479 aaKnown RBP14.57□□□□□ -0.08
HDAC4-208ENST00000463007 DDX19AQ9NUU7 478 aaKnown RBP14.57□□□□□ -0.08
HDAC4-208ENST00000463007 CCDC69A6NI79 296 aa14.56□□□□□ -0.08
HDAC4-208ENST00000463007 TOM1L2Q6ZVM7 507 aa14.56□□□□□ -0.08
HDAC4-208ENST00000463007 ANKRD7Q92527 254 aa14.56□□□□□ -0.08
HDAC4-208ENST00000463007 A0A1B0GVL5 298 aa14.56□□□□□ -0.08
HDAC4-208ENST00000463007 SMTNL1A8MU46 457 aa14.56□□□□□ -0.08
HDAC4-208ENST00000463007 NEK1Q96PY6 1258 aa14.56□□□□□ -0.08
HDAC4-208ENST00000463007 KINO60870 393 aaKnown RBP14.55□□□□□ -0.08
HDAC4-208ENST00000463007 CCDC73Q6ZRK6 1079 aa14.55□□□□□ -0.08
HDAC4-208ENST00000463007 GJB4Q9NTQ9 266 aa14.55□□□□□ -0.08
HDAC4-208ENST00000463007 PDE4CQ08493 712 aa14.55□□□□□ -0.08
HDAC4-208ENST00000463007 LRRC8AQ8IWT6 810 aa14.55□□□□□ -0.08
HDAC4-208ENST00000463007 PALLDQ8WX93 1383 aa14.55□□□□□ -0.08
HDAC4-208ENST00000463007 TAF5LO75529 589 aa14.55□□□□□ -0.08
HDAC4-208ENST00000463007 HAUS7Q99871 368 aa14.55□□□□□ -0.08
HDAC4-208ENST00000463007 GTPBP4Q9BZE4 634 aaKnown RBP14.55□□□□□ -0.08
HDAC4-208ENST00000463007 GPR108Q9NPR9 543 aa14.55□□□□□ -0.08
HDAC4-208ENST00000463007 CICQ96RK0 1608 aaPredicted RBP14.54□□□□□ -0.08
HDAC4-208ENST00000463007 A1BGP04217 495 aa14.54□□□□□ -0.08
HDAC4-208ENST00000463007 SF3A1Q15459 793 aaKnown RBP14.54□□□□□ -0.08
HDAC4-208ENST00000463007 FSIP1Q8NA03 581 aa14.54□□□□□ -0.08
HDAC4-208ENST00000463007 USP28Q96RU2 1077 aa14.54□□□□□ -0.08
HDAC4-208ENST00000463007 GOLPH3LQ9H4A5 285 aa14.54□□□□□ -0.08
HDAC4-208ENST00000463007 CTNNA3Q9UI47 895 aa14.54□□□□□ -0.08
HDAC4-208ENST00000463007 CTIFO43310 598 aaKnown RBP14.54□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms