RNA–Protein interactions for RNA: ENST00000441602.5

VPS50-205, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,474 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-205ENST00000441602 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.18□□□□□ -1.26
VPS50-205ENST00000441602 IGSF3O75054 1194 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 FGFR2P21802 821 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 ZAP70P43403 619 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 RPS8P62241 208 aaKnown RBP7.18□□□□□ -1.26
VPS50-205ENST00000441602 PTH1RQ03431 593 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 CHRNDQ07001 517 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 NECTIN1Q15223 517 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 VGLL2Q8N8G2 317 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 RPGRQ92834 1020 aaKnown RBP7.18□□□□□ -1.26
VPS50-205ENST00000441602 EDC3Q96F86 508 aaKnown RBP7.18□□□□□ -1.26
VPS50-205ENST00000441602 UPF3BQ9BZI7 483 aaKnown RBP7.18□□□□□ -1.26
VPS50-205ENST00000441602 SEC31BQ9NQW1 1179 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 MYH14Q7Z406 1995 aaKnown RBP7.18□□□□□ -1.26
VPS50-205ENST00000441602 SEMA3EO15041 775 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 TMX3Q96JJ7 454 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 BCL2L12Q9HB09 334 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 FOXD4L1Q9NU39 408 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 LY75O60449 1722 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 IDH1O75874 414 aaKnown RBP7.18□□□□□ -1.26
VPS50-205ENST00000441602 UBE3CQ15386 1083 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 TXNRD1Q16881 649 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 IMMTQ16891 758 aaKnown RBP7.18□□□□□ -1.26
VPS50-205ENST00000441602 TSGA10IPQ3SY00 556 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 TMED8Q6PL24 325 aaPredicted RBP7.18□□□□□ -1.26
VPS50-205ENST00000441602 PTF1AQ7RTS3 328 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 HELBQ8NG08 1087 aaPredicted RBP7.18□□□□□ -1.26
VPS50-205ENST00000441602 TMX4Q9H1E5 349 aaPredicted RBP7.18□□□□□ -1.26
VPS50-205ENST00000441602 ZSWIM6Q9HCJ5 1215 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 C4BP0C0L5 1744 aa7.18□□□□□ -1.26
VPS50-205ENST00000441602 PLSCR1O15162 318 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 FRAT2O75474 233 aaPredicted RBP7.17□□□□□ -1.26
VPS50-205ENST00000441602 RUFY3Q7L099 469 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 TMC4Q7Z404 712 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 SPATA5Q8NB90 893 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 RBM17Q96I25 401 aaKnown RBP7.17□□□□□ -1.26
VPS50-205ENST00000441602 DENND2AQ9ULE3 1009 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 APBA3O96018 575 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 PHKA1P46020 1223 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 CUL4AQ13619 759 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 NOL8Q76FK4 1167 aaKnown RBP7.17□□□□□ -1.26
VPS50-205ENST00000441602 NEK1Q96PY6 1258 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 SMC3Q9UQE7 1217 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 KIF3AQ9Y496 699 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 GNAT2P19087 354 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 TRDNQ13061 729 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 NFIXQ14938 502 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 RAB3GAP1Q15042 981 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 SKOR2Q2VWA4 1001 aaPredicted RBP7.17□□□□□ -1.26
VPS50-205ENST00000441602 NLGN1Q8N2Q7 840 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 NACAP1Q9BZK3 213 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 ALDH8A1Q9H2A2 487 aaPredicted RBP7.17□□□□□ -1.26
VPS50-205ENST00000441602 TFCP2L1Q9NZI6 479 aa7.17□□□□□ -1.26
VPS50-205ENST00000441602 MAST3O60307 1309 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 CD2BP2O95400 341 aaKnown RBP7.16□□□□□ -1.26
VPS50-205ENST00000441602 RPS6KB1P23443 525 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 MCM4P33991 863 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 ADD2P35612 726 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 SLC9C2Q5TAH2 1124 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 RALYLQ86SE5 291 aaKnown RBP7.16□□□□□ -1.26
VPS50-205ENST00000441602 ZNF589Q86UQ0 364 aaPredicted RBP7.16□□□□□ -1.26
VPS50-205ENST00000441602 AIDAQ96BJ3 306 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 IL25Q9H293 177 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 LRP2BPQ9P2M1 347 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 SBF2Q86WG5 1849 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 SERPINB2P05120 415 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 MCAMP43121 646 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 GRAPQ13588 217 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 SPTY2D1Q68D10 685 aaPredicted RBP7.16□□□□□ -1.26
VPS50-205ENST00000441602 RASEFQ8IZ41 740 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 GRAPLQ8TC17 118 aaPredicted RBP7.16□□□□□ -1.26
VPS50-205ENST00000441602 LEMD3Q9Y2U8 911 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 NDUFB9Q9Y6M9 179 aa7.16□□□□□ -1.26
VPS50-205ENST00000441602 RPAP1Q9BWH6 1393 aaPredicted RBP7.15□□□□□ -1.26
VPS50-205ENST00000441602 PDCP20941 246 aa7.15□□□□□ -1.26
VPS50-205ENST00000441602 AK2P54819 239 aa7.15□□□□□ -1.26
VPS50-205ENST00000441602 ZGPATQ8N5A5 531 aaKnown RBP7.15□□□□□ -1.26
VPS50-205ENST00000441602 TTC14Q96N46 770 aa7.15□□□□□ -1.26
VPS50-205ENST00000441602 ATP6V1DQ9Y5K8 247 aa7.15□□□□□ -1.26
VPS50-205ENST00000441602 WDR33Q9C0J8 1336 aaKnown RBP7.15□□□□□ -1.26
VPS50-205ENST00000441602 APPP05067 770 aa7.15□□□□□ -1.26
VPS50-205ENST00000441602 PDE6AP16499 860 aa7.15□□□□□ -1.26
VPS50-205ENST00000441602 SF3B2Q13435 895 aaKnown RBP7.15□□□□□ -1.26
VPS50-205ENST00000441602 CCDC129Q6ZRS4 1044 aa7.15□□□□□ -1.26
VPS50-205ENST00000441602 MINPP1Q9UNW1 487 aa7.15□□□□□ -1.26
VPS50-205ENST00000441602 GPAA1O43292 621 aa7.15□□□□□ -1.27
VPS50-205ENST00000441602 HSPD1P10809 573 aaKnown RBP7.15□□□□□ -1.27
VPS50-205ENST00000441602 DDIT3P35638 169 aa7.15□□□□□ -1.27
VPS50-205ENST00000441602 LRRC4BQ9NT99 713 aa7.15□□□□□ -1.27
VPS50-205ENST00000441602 RAI14Q9P0K7 980 aa7.15□□□□□ -1.27
VPS50-205ENST00000441602 PDS5AQ29RF7 1337 aaKnown RBP7.15□□□□□ -1.27
VPS50-205ENST00000441602 COL24A1Q17RW2 1714 aa7.15□□□□□ -1.27
VPS50-205ENST00000441602 DDX60Q8IY21 1712 aaKnown RBP7.15□□□□□ -1.27
VPS50-205ENST00000441602 ZNF213O14771 459 aa7.14□□□□□ -1.27
VPS50-205ENST00000441602 BBOX1O75936 387 aa7.14□□□□□ -1.27
VPS50-205ENST00000441602 GYS1P13807 737 aa7.14□□□□□ -1.27
VPS50-205ENST00000441602 NCLP19338 710 aaKnown RBP7.14□□□□□ -1.27
VPS50-205ENST00000441602 ATP2B4P23634 1241 aa7.14□□□□□ -1.27
VPS50-205ENST00000441602 HIBADHP31937 336 aaKnown RBP7.14□□□□□ -1.27
VPS50-205ENST00000441602 SCARF1Q14162 830 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms