RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 RNF187Q5TA31 235 aaPredicted RBP13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 GSTA5Q7RTV2 222 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 SERPINA10Q9UK55 444 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 FAM13AO94988 1023 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 SSFA2P28290 1259 aa13.72□□□□□ -0.21
CCDC88A-207ENST00000436346 AKNAD1Q5T1N1 836 aa13.71□□□□□ -0.21
CCDC88A-207ENST00000436346 RIMBP2O15034 1052 aa13.71□□□□□ -0.21
CCDC88A-207ENST00000436346 GIMAP7Q8NHV1 300 aa13.71□□□□□ -0.21
CCDC88A-207ENST00000436346 TFIP11Q9UBB9 837 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-207ENST00000436346 ITSN1Q15811 1721 aa13.71□□□□□ -0.21
CCDC88A-207ENST00000436346 SPHKAPQ2M3C7 1700 aa13.71□□□□□ -0.21
CCDC88A-207ENST00000436346 TERF1P54274 439 aa13.71□□□□□ -0.21
CCDC88A-207ENST00000436346 CEP112Q8N8E3 955 aa13.71□□□□□ -0.21
CCDC88A-207ENST00000436346 RRAGBQ5VZM2 374 aa13.71□□□□□ -0.21
CCDC88A-207ENST00000436346 PAIP2Q9BPZ3 127 aaKnown RBP13.71□□□□□ -0.21
CCDC88A-207ENST00000436346 ZFYP08048 801 aaPredicted RBP13.71□□□□□ -0.22
CCDC88A-207ENST00000436346 CABLES1Q8TDN4 633 aa13.71□□□□□ -0.22
CCDC88A-207ENST00000436346 DDX23Q9BUQ8 820 aaKnown RBP13.71□□□□□ -0.22
CCDC88A-207ENST00000436346 DZIP3Q86Y13 1208 aaKnown RBP13.71□□□□□ -0.22
CCDC88A-207ENST00000436346 IQCGQ9H095 443 aaKnown RBP13.71□□□□□ -0.22
CCDC88A-207ENST00000436346 N4BP3O15049 544 aa13.71□□□□□ -0.22
CCDC88A-207ENST00000436346 UBE2HP62256 183 aa13.71□□□□□ -0.22
CCDC88A-207ENST00000436346 HSP90AA4PQ58FG1 418 aa13.71□□□□□ -0.22
CCDC88A-207ENST00000436346 NBPF14Q5TI25 921 aa13.71□□□□□ -0.22
CCDC88A-207ENST00000436346 MCM9Q9NXL9 1143 aa13.71□□□□□ -0.22
CCDC88A-207ENST00000436346 LDHBP07195 334 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 NBPF7P0C2Y1 421 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 RBM25P49756 843 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 KIAA0753Q2KHM9 967 aa13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 TNPO1Q92973 898 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 GJA3Q9Y6H8 435 aa13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 PROCA1Q8NCQ7 364 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 ALG1Q9BT22 464 aa13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 ESPNB1AK53 854 aa13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 TCHPQ9BT92 498 aa13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 SLC9C2Q5TAH2 1124 aa13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 KIF4AO95239 1232 aa13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 CNBD1Q8NA66 436 aa13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 KRT2P35908 639 aa13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 RBM17Q96I25 401 aaKnown RBP13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 ZSCAN16Q9H4T2 348 aaPredicted RBP13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 CEP152O94986 1710 aa13.7□□□□□ -0.22
CCDC88A-207ENST00000436346 ADCY5O95622 1261 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 NFATC2IPQ8NCF5 419 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 Q6ZUG5 572 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 APBB1IPQ7Z5R6 666 aaPredicted RBP13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 CEP83Q9Y592 693 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 POTEB2H3BUK9 544 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 MIGA1Q8NAN2 632 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 ODF2LQ9ULJ1 636 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 GNAT2P19087 354 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 MCM7P33993 719 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 MCMDC2Q4G0Z9 681 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 CTAGE1Q96RT6 745 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 ZFYVE9O95405 1425 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 TRAF1Q13077 416 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 SNW1Q13573 536 aaKnown RBP13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 DDX12PQ92771 950 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 PODXL2Q9NZ53 605 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 TMTC2Q8N394 836 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 SLTMQ9NWH9 1034 aaKnown RBP eCLIP13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 MARCKSP29966 332 aaPredicted RBP13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 COPS6Q7L5N1 327 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 FAM107BQ9H098 131 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 USP25Q9UHP3 1055 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 SPAG5Q96R06 1193 aa13.69□□□□□ -0.22
CCDC88A-207ENST00000436346 TPTE2Q6XPS3 522 aa13.68□□□□□ -0.22
CCDC88A-207ENST00000436346 BMP15O95972 392 aa13.68□□□□□ -0.22
CCDC88A-207ENST00000436346 RAB3IL1Q8TBN0 382 aa13.68□□□□□ -0.22
CCDC88A-207ENST00000436346 TNNI2P48788 182 aa13.68□□□□□ -0.22
CCDC88A-207ENST00000436346 KCNG4Q8TDN1 519 aa13.68□□□□□ -0.22
CCDC88A-207ENST00000436346 PKD2L1Q9P0L9 805 aa13.68□□□□□ -0.22
CCDC88A-207ENST00000436346 POLR3GO15318 223 aaPredicted RBP13.68□□□□□ -0.22
CCDC88A-207ENST00000436346 ZSCAN30Q86W11 494 aa13.68□□□□□ -0.22
CCDC88A-207ENST00000436346 PLCH2O75038 1416 aa13.68□□□□□ -0.22
CCDC88A-207ENST00000436346 YTHDC2Q9H6S0 1430 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-207ENST00000436346 BMP2KLQ5H9B9 411 aa13.68□□□□□ -0.22
CCDC88A-207ENST00000436346 ZC3H12CQ9C0D7 883 aaKnown RBP13.68□□□□□ -0.22
CCDC88A-207ENST00000436346 QRICH2Q9H0J4 1663 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 GOLGA6L9A6NEM1 432 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 BACH1O14867 736 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 GNAQP50148 359 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 FLT4P35916 1363 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 NEMFO60524 1076 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 PTGS1P23219 599 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 MAK16Q9BXY0 300 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 RTL1A6NKG5 1358 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 AKR1B10O60218 316 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 MAPK8IP2Q13387 824 aaPredicted RBP13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 MICALCLQ6ZW33 695 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 SKAP1Q86WV1 359 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 SAP30BPQ9UHR5 308 aaKnown RBP13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 CDC42BPAQ5VT25 1732 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 NUCB1Q02818 461 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.67□□□□□ -0.225e-7■■□□□ 13.2
CCDC88A-207ENST00000436346 SELENOOQ9BVL4 669 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 IL16Q14005 1332 aa13.67□□□□□ -0.22
CCDC88A-207ENST00000436346 UBASH3AP57075 661 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 SPECC1LQ69YQ0 1117 aa13.66□□□□□ -0.22
CCDC88A-207ENST00000436346 ZFP91Q96JP5 570 aaPredicted RBP13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms