RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 TTC12Q9H892 705 aaPredicted RBP17.49■□□□□ 0.39
PTPRF-206ENST00000429895 POLD1P28340 1107 aa17.49■□□□□ 0.39
PTPRF-206ENST00000429895 GNAQP50148 359 aa17.49■□□□□ 0.39
PTPRF-206ENST00000429895 TRAF1Q13077 416 aa17.49■□□□□ 0.39
PTPRF-206ENST00000429895 ZSCAN23Q3MJ62 389 aa17.49■□□□□ 0.39
PTPRF-206ENST00000429895 GRM8O00222 908 aa17.49■□□□□ 0.39
PTPRF-206ENST00000429895 NMIQ13287 307 aaPredicted RBP17.49■□□□□ 0.39
PTPRF-206ENST00000429895 JDP2Q8WYK2 163 aa17.49■□□□□ 0.39
PTPRF-206ENST00000429895 LRRC59Q96AG4 307 aaKnown RBP17.49■□□□□ 0.39
PTPRF-206ENST00000429895 PKNOX2Q96KN3 472 aa17.49■□□□□ 0.39
PTPRF-206ENST00000429895 SELENOOQ9BVL4 669 aa17.49■□□□□ 0.39
PTPRF-206ENST00000429895 CTAGE1Q96RT6 745 aa17.49■□□□□ 0.39
PTPRF-206ENST00000429895 PAG1Q9NWQ8 432 aa17.49■□□□□ 0.39
PTPRF-206ENST00000429895 PPP4R3BQ5MIZ7 849 aa17.48■□□□□ 0.39
PTPRF-206ENST00000429895 AOPEPQ8N6M6 819 aa17.48■□□□□ 0.39
PTPRF-206ENST00000429895 RASAL2Q9UJF2 1139 aa17.48■□□□□ 0.39
PTPRF-206ENST00000429895 NYXQ9GZU5 481 aa17.48■□□□□ 0.39
PTPRF-206ENST00000429895 PSMA7O14818 248 aa17.48■□□□□ 0.39
PTPRF-206ENST00000429895 RRP9O43818 475 aaKnown RBP17.48■□□□□ 0.39
PTPRF-206ENST00000429895 RXRAP19793 462 aa17.48■□□□□ 0.39
PTPRF-206ENST00000429895 KCNG4Q8TDN1 519 aa17.48■□□□□ 0.39
PTPRF-206ENST00000429895 GJA3Q9Y6H8 435 aa17.48■□□□□ 0.39
PTPRF-206ENST00000429895 BMP15O95972 392 aa17.47■□□□□ 0.39
PTPRF-206ENST00000429895 SAP30BPQ9UHR5 308 aaKnown RBP17.47■□□□□ 0.39
PTPRF-206ENST00000429895 RTCBQ9Y3I0 505 aaKnown RBP17.47■□□□□ 0.39
PTPRF-206ENST00000429895 BACH1O14867 736 aa17.47■□□□□ 0.39
PTPRF-206ENST00000429895 MRPS27Q92552 414 aaKnown RBP17.47■□□□□ 0.39
PTPRF-206ENST00000429895 KIF14Q15058 1648 aa17.47■□□□□ 0.39
PTPRF-206ENST00000429895 TOM1O60784 492 aa17.47■□□□□ 0.39
PTPRF-206ENST00000429895 SMIM23A6NLE4 172 aa17.46■□□□□ 0.39
PTPRF-206ENST00000429895 KRT2P35908 639 aa17.46■□□□□ 0.39
PTPRF-206ENST00000429895 IL15P40933 162 aaPredicted RBP17.46■□□□□ 0.39
PTPRF-206ENST00000429895 KRT79Q5XKE5 535 aa17.46■□□□□ 0.39
PTPRF-206ENST00000429895 STX17P56962 302 aa17.46■□□□□ 0.39
PTPRF-206ENST00000429895 PSMC4P43686 418 aa17.46■□□□□ 0.39
PTPRF-206ENST00000429895 USP48Q86UV5 1035 aa17.46■□□□□ 0.39
PTPRF-206ENST00000429895 CAPZA3Q96KX2 299 aa17.46■□□□□ 0.39
PTPRF-206ENST00000429895 HARSP12081 509 aaKnown RBP17.45■□□□□ 0.38
PTPRF-206ENST00000429895 TPTE2Q6XPS3 522 aa17.45■□□□□ 0.38
PTPRF-206ENST00000429895 DDX12PQ92771 950 aa17.45■□□□□ 0.38
PTPRF-206ENST00000429895 IRS4O14654 1257 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-206ENST00000429895 KIF4AO95239 1232 aa17.45■□□□□ 0.38
PTPRF-206ENST00000429895 B4DLN1 442 aa17.45■□□□□ 0.38
PTPRF-206ENST00000429895 MRPL12P52815 198 aaKnown RBP17.45■□□□□ 0.38
PTPRF-206ENST00000429895 PROCA1Q8NCQ7 364 aaPredicted RBP17.45■□□□□ 0.38
PTPRF-206ENST00000429895 ZKSCAN3Q9BRR0 538 aa17.45■□□□□ 0.38
PTPRF-206ENST00000429895 DNAJC25Q9H1X3 360 aa17.45■□□□□ 0.38
PTPRF-206ENST00000429895 NUCB1Q02818 461 aa17.45■□□□□ 0.38
PTPRF-206ENST00000429895 NFATC2IPQ8NCF5 419 aa17.45■□□□□ 0.38
PTPRF-206ENST00000429895 IPO4Q8TEX9 1081 aaKnown RBP17.45■□□□□ 0.38
PTPRF-206ENST00000429895 DNAI1Q9UI46 699 aa17.45■□□□□ 0.38
PTPRF-206ENST00000429895 CTAGE15A4D2H0 777 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 CTAGE8P0CG41 777 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 APOBRQ0VD83 1088 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 CTAGE6Q86UF2 777 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 CTAGE4Q8IX94 777 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 SELENOSQ9BQE4 189 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 DISP3Q9P2K9 1392 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 LMOD1P29536 600 aaPredicted RBP17.44■□□□□ 0.38
PTPRF-206ENST00000429895 KSR2Q6VAB6 950 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 TRIM75PA6NK02 468 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 PDE1AP54750 535 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 ESYT1Q9BSJ8 1104 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 RTL9Q8NET4 1388 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 NCOA1Q15788 1441 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 RAB3GAP1Q15042 981 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 ZNF408Q9H9D4 720 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 PLB1Q6P1J6 1458 aa17.44■□□□□ 0.38
PTPRF-206ENST00000429895 SCAF11Q99590 1463 aaKnown RBP17.44■□□□□ 0.38
PTPRF-206ENST00000429895 LDHBP07195 334 aaKnown RBP17.43■□□□□ 0.38
PTPRF-206ENST00000429895 AKAP4Q5JQC9 854 aa17.43■□□□□ 0.38
PTPRF-206ENST00000429895 RTL1A6NKG5 1358 aa17.43■□□□□ 0.38
PTPRF-206ENST00000429895 NSD2O96028 1365 aa17.43■□□□□ 0.38
PTPRF-206ENST00000429895 TACC1O75410 805 aa17.43■□□□□ 0.38
PTPRF-206ENST00000429895 UBXN1Q04323 297 aa17.43■□□□□ 0.38
PTPRF-206ENST00000429895 DNM1Q05193 864 aaKnown RBP17.43■□□□□ 0.38
PTPRF-206ENST00000429895 CCDC6Q16204 474 aa17.43■□□□□ 0.38
PTPRF-206ENST00000429895 C14orf93Q9H972 538 aaKnown RBP17.43■□□□□ 0.38
PTPRF-206ENST00000429895 SKILP12757 684 aa17.43■□□□□ 0.38
PTPRF-206ENST00000429895 TFCP2Q12800 502 aa17.43■□□□□ 0.38
PTPRF-206ENST00000429895 CWF19L2Q2TBE0 894 aaKnown RBP17.43■□□□□ 0.38
PTPRF-206ENST00000429895 DACT1Q9NYF0 836 aa17.43■□□□□ 0.38
PTPRF-206ENST00000429895 DCAF17Q5H9S7 520 aaPredicted RBP17.42■□□□□ 0.38
PTPRF-206ENST00000429895 RNF113AO15541 343 aaKnown RBP17.42■□□□□ 0.38
PTPRF-206ENST00000429895 IL2RBP14784 551 aa17.42■□□□□ 0.38
PTPRF-206ENST00000429895 PRPHP41219 470 aa17.42■□□□□ 0.38
PTPRF-206ENST00000429895 C8orf58Q8NAV2 365 aa17.42■□□□□ 0.38
PTPRF-206ENST00000429895 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.42■□□□□ 0.38
PTPRF-206ENST00000429895 UVSSAQ2YD98 709 aa17.42■□□□□ 0.38
PTPRF-206ENST00000429895 NEK11Q8NG66 645 aa17.42■□□□□ 0.38
PTPRF-206ENST00000429895 PTPN23Q9H3S7 1636 aa17.42■□□□□ 0.38
PTPRF-206ENST00000429895 SYT1P21579 422 aa17.42■□□□□ 0.38
PTPRF-206ENST00000429895 CCDC77Q9BR77 488 aa17.42■□□□□ 0.38
PTPRF-206ENST00000429895 NPHP3Q7Z494 1330 aa17.42■□□□□ 0.38
PTPRF-206ENST00000429895 SH3BP5O60239 455 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 ZRANB1Q9UGI0 708 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 CC2D2AQ9P2K1 1620 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 ANKRD36BQ8N2N9 1353 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 RAPGEF1Q13905 1077 aa17.41■□□□□ 0.38
PTPRF-206ENST00000429895 BMS1Q14692 1282 aaKnown RBP17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms