RNA–Protein interactions for RNA: ENST00000428135.7

SNX13-203, Transcript of sorting nexin 13, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SNX13, Length 6,357 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-203ENST00000428135 GIMAP6Q6P9H5 292 aa11.18□□□□□ -0.62
SNX13-203ENST00000428135 TMC6Q7Z403 805 aa11.18□□□□□ -0.62
SNX13-203ENST00000428135 CIZ1Q9ULV3 898 aaPredicted RBP11.18□□□□□ -0.62
SNX13-203ENST00000428135 RBM17Q96I25 401 aaKnown RBP11.17□□□□□ -0.62
SNX13-203ENST00000428135 TESK2Q96S53 571 aa11.17□□□□□ -0.62
SNX13-203ENST00000428135 GPCPD1Q9NPB8 672 aa11.17□□□□□ -0.62
SNX13-203ENST00000428135 KIAA0232Q92628 1395 aa11.17□□□□□ -0.62
SNX13-203ENST00000428135 TMX3Q96JJ7 454 aa11.17□□□□□ -0.62
SNX13-203ENST00000428135 TMCO5BA8MYB1 307 aa11.17□□□□□ -0.62
SNX13-203ENST00000428135 TBCAO75347 108 aaKnown RBP11.17□□□□□ -0.62
SNX13-203ENST00000428135 ZNF790Q6PG37 636 aa11.17□□□□□ -0.62
SNX13-203ENST00000428135 CNPY2Q9Y2B0 182 aa11.17□□□□□ -0.62
SNX13-203ENST00000428135 ARHGEF10O15013 1369 aa11.17□□□□□ -0.62
SNX13-203ENST00000428135 NOP2P46087 812 aaKnown RBP11.17□□□□□ -0.62
SNX13-203ENST00000428135 LINS1Q8NG48 757 aa11.17□□□□□ -0.62
SNX13-203ENST00000428135 CTNNA2P26232 953 aa11.17□□□□□ -0.62
SNX13-203ENST00000428135 BMP2KLQ5H9B9 411 aa11.17□□□□□ -0.62
SNX13-203ENST00000428135 VAMP4O75379 141 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 URI1O94763 535 aaPredicted RBP11.16□□□□□ -0.62
SNX13-203ENST00000428135 TXLNBQ8N3L3 684 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 TCOF1Q13428 1488 aaKnown RBP11.16□□□□□ -0.62
SNX13-203ENST00000428135 MBD4O95243 580 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 ANKRD44Q8N8A2 993 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 ESYT1Q9BSJ8 1104 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 TCHPQ9BT92 498 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 IL16Q14005 1332 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 UQCRHLA0A096LP55 91 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 ALDH1L1O75891 902 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 UQCRHP07919 91 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 KIF4BQ2VIQ3 1234 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 MCM7P33993 719 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 STAT6P42226 847 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 KRT27Q7Z3Y8 459 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 ZNF354CQ86Y25 554 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 TRIM47Q96LD4 638 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 EXOC1Q9NV70 894 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 ARHGAP27Q6ZUM4 889 aa11.16□□□□□ -0.62
SNX13-203ENST00000428135 BCCIPQ9P287 314 aaKnown RBP eCLIP11.16□□□□□ -0.628e-7■■■■□ 21.9
SNX13-203ENST00000428135 CFAP43Q8NDM7 1665 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 DNMT1P26358 1616 aaKnown RBP11.15□□□□□ -0.62
SNX13-203ENST00000428135 PRDM1O75626 825 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 GBP2P32456 591 aaPredicted RBP11.15□□□□□ -0.62
SNX13-203ENST00000428135 SEPT12Q8IYM1 358 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 ARMT1Q9H993 441 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 GSTTP1A0A1W2PQM5 241 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 RRAGBQ5VZM2 374 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 CEP85Q6P2H3 762 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 CERKQ8TCT0 537 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 PZPP20742 1482 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 ARID5AQ03989 594 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 CCDC148Q8NFR7 591 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 AMPD3Q01432 767 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 TEX11Q8IYF3 940 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 COL17A1Q9UMD9 1497 aaPredicted RBP11.15□□□□□ -0.62
SNX13-203ENST00000428135 ABCA8O94911 1581 aa11.15□□□□□ -0.62
SNX13-203ENST00000428135 MAP3K9P80192 1104 aa11.15□□□□□ -0.63
SNX13-203ENST00000428135 DHX58Q96C10 678 aa11.15□□□□□ -0.63
SNX13-203ENST00000428135 RNF113AO15541 343 aaKnown RBP11.14□□□□□ -0.63
SNX13-203ENST00000428135 PHACTR2O75167 634 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 CASQ1P31415 396 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 HSPA1LP34931 641 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 ZSWIM4Q9H7M6 989 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 AFF2P51816 1311 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 ZFYP08048 801 aaPredicted RBP11.14□□□□□ -0.63
SNX13-203ENST00000428135 SYKP43405 635 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 VPS36Q86VN1 386 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 AATFQ9NY61 560 aaKnown RBP eCLIP11.14□□□□□ -0.63
SNX13-203ENST00000428135 HMG20BQ9P0W2 317 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 GJC1P36383 396 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 CCDC174Q6PII3 467 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 LARGE2Q8N3Y3 721 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 CDCA7Q9BWT1 371 aaPredicted RBP11.14□□□□□ -0.63
SNX13-203ENST00000428135 SHANK2Q9UPX8 1470 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 A0A1B0GUL7 405 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 SPDYE3A6NKU9 549 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 H0YIN7 160 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 FGFR1OPO95684 399 aaKnown RBP11.14□□□□□ -0.63
SNX13-203ENST00000428135 FCHSD1Q86WN1 690 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 CETN2P41208 172 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 BRINP3Q76B58 766 aa11.14□□□□□ -0.63
SNX13-203ENST00000428135 CCDC102BQ68D86 513 aa11.13□□□□□ -0.63
SNX13-203ENST00000428135 LUZP1Q86V48 1076 aa11.13□□□□□ -0.63
SNX13-203ENST00000428135 MPHOSPH6Q99547 160 aaKnown RBP11.13□□□□□ -0.63
SNX13-203ENST00000428135 RALGAPBQ86X10 1494 aa11.13□□□□□ -0.63
SNX13-203ENST00000428135 PSDA5PKW4 1024 aaPredicted RBP11.13□□□□□ -0.63
SNX13-203ENST00000428135 CHMP2AO43633 222 aa11.13□□□□□ -0.63
SNX13-203ENST00000428135 HARSP12081 509 aaKnown RBP11.13□□□□□ -0.63
SNX13-203ENST00000428135 RBM25P49756 843 aaKnown RBP11.13□□□□□ -0.63
SNX13-203ENST00000428135 OTUD7AQ8TE49 926 aaPredicted RBP11.13□□□□□ -0.63
SNX13-203ENST00000428135 EYA3Q99504 573 aa11.13□□□□□ -0.63
SNX13-203ENST00000428135 GINS2Q9Y248 185 aa11.13□□□□□ -0.63
SNX13-203ENST00000428135 FAM170AA1A519 330 aa11.13□□□□□ -0.63
SNX13-203ENST00000428135 NBPF7P0C2Y1 421 aaPredicted RBP11.13□□□□□ -0.63
SNX13-203ENST00000428135 C16orf45Q96MC5 204 aaPredicted RBP11.13□□□□□ -0.63
SNX13-203ENST00000428135 CNNM2Q9H8M5 875 aa11.13□□□□□ -0.63
SNX13-203ENST00000428135 B4E1Z4 1266 aa11.13□□□□□ -0.63
SNX13-203ENST00000428135 KCNQ3O43525 872 aa11.13□□□□□ -0.63
SNX13-203ENST00000428135 KIF5CO60282 957 aa11.13□□□□□ -0.63
SNX13-203ENST00000428135 PTGS1P23219 599 aa11.13□□□□□ -0.63
SNX13-203ENST00000428135 LEKR1Q6ZMV7 388 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms