RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 CRB1P82279 1406 aa12.4□□□□□ -0.42
TCOF1-204ENST00000427724 MADDQ8WXG6 1647 aa12.4□□□□□ -0.43
TCOF1-204ENST00000427724 SPATA31A5Q5VU36 1347 aa12.4□□□□□ -0.43
TCOF1-204ENST00000427724 SPATA31A7Q8IWB4 1347 aa12.4□□□□□ -0.43
TCOF1-204ENST00000427724 A0A1B0GUL7 405 aa12.4□□□□□ -0.43
TCOF1-204ENST00000427724 GRIN3BO60391 1043 aa12.4□□□□□ -0.43
TCOF1-204ENST00000427724 PDE1AP54750 535 aa12.4□□□□□ -0.43
TCOF1-204ENST00000427724 CEP85Q6P2H3 762 aa12.4□□□□□ -0.43
TCOF1-204ENST00000427724 TTC6Q86TZ1 520 aa12.4□□□□□ -0.43
TCOF1-204ENST00000427724 CEP89Q96ST8 783 aa12.4□□□□□ -0.43
TCOF1-204ENST00000427724 KAT14Q9H8E8 782 aa12.4□□□□□ -0.43
TCOF1-204ENST00000427724 TPM4P67936 248 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 TMX3Q96JJ7 454 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 SPDYE4A6NLX3 237 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 TCP10L2B9ZVM9 353 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 MKRN3Q13064 507 aaKnown RBP12.39□□□□□ -0.43
TCOF1-204ENST00000427724 SLC15A2Q16348 729 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 PROSER3Q2NL68 480 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 NBPF7P0C2Y1 421 aaPredicted RBP12.39□□□□□ -0.43
TCOF1-204ENST00000427724 CASTP20810 708 aaKnown RBP12.39□□□□□ -0.43
TCOF1-204ENST00000427724 ATP2B4P23634 1241 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 CHRNA5P30532 468 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 ATP8B2P98198 1209 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 TNFAIP1Q13829 316 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 FERMT3Q86UX7 667 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 RAB11FIP4Q86YS3 637 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 CCDC125Q86Z20 511 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 TMOD4Q9NZQ9 345 aa12.39□□□□□ -0.43
TCOF1-204ENST00000427724 CLRN2A0PK11 232 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 GYG1P46976 350 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 CCDC144CPQ8IYA2 1237 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 BBXQ8WY36 941 aaPredicted RBP12.38□□□□□ -0.43
TCOF1-204ENST00000427724 PLEKHF1Q96S99 279 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 OFD1O75665 1012 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 BBOX1O75936 387 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 KRT32Q14532 448 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 PCMTD1Q96MG8 357 aaPredicted RBP12.38□□□□□ -0.43
TCOF1-204ENST00000427724 CGNQ9P2M7 1197 aaKnown RBP12.38□□□□□ -0.43
TCOF1-204ENST00000427724 CTSWP56202 376 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 CATIPQ7Z7H3 387 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 PDCL2Q8N4E4 241 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 EVI5LQ96CN4 794 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 DDX11Q96FC9 970 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 OVOS2A0A0G2JMS6 1433 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 OVOS2A0A0J9YW53 1432 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 OVOS2Q6IE36 1432 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 ADGRB3O60242 1522 aa12.38□□□□□ -0.43
TCOF1-204ENST00000427724 LARP1BQ659C4 914 aaKnown RBP12.37□□□□□ -0.43
TCOF1-204ENST00000427724 HOOK2Q96ED9 719 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 MASTLQ96GX5 879 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 PDRG1Q9NUG6 133 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 CEP170BQ9Y4F5 1589 aaPredicted RBP12.37□□□□□ -0.43
TCOF1-204ENST00000427724 MAST3O60307 1309 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 IGSF3O75054 1194 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 NPR1P16066 1061 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 USP48Q86UV5 1035 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 CCDC83Q8IWF9 413 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 ZBTB38Q8NAP3 1195 aaPredicted RBP12.37□□□□□ -0.43
TCOF1-204ENST00000427724 SUCLG2Q96I99 432 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 USP26Q9BXU7 913 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 NARFQ9UHQ1 456 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 SLC12A7Q9Y666 1083 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 PPFIA3O75145 1194 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 CIAPIN1Q6FI81 312 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 TEKT1Q969V4 418 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 ATP7BP35670 1465 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 CCDC73Q6ZRK6 1079 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 SEC31BQ9NQW1 1179 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 IQGAP3Q86VI3 1631 aa12.37□□□□□ -0.43
TCOF1-204ENST00000427724 RTL1A6NKG5 1358 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 DYNC1I1O14576 645 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 TBC1D22AQ8WUA7 517 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 KIF1BO60333 1816 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 PDCP20941 246 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 TXLNAP40222 546 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 RTKN2Q8IZC4 609 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 MPHOSPH6Q99547 160 aaKnown RBP12.36□□□□□ -0.43
TCOF1-204ENST00000427724 NEURL1BA8MQ27 555 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 TMEM67Q5HYA8 995 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 PPP4R3BQ5MIZ7 849 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 LPIN2Q92539 896 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 SDF4Q9BRK5 362 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 USP40Q9NVE5 1235 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 PAG1Q9NWQ8 432 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 AATFQ9NY61 560 aaKnown RBP eCLIP12.36□□□□□ -0.43
TCOF1-204ENST00000427724 ALKQ9UM73 1620 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 ADAMTS13Q76LX8 1427 aa12.36□□□□□ -0.43
TCOF1-204ENST00000427724 MYOM2P54296 1465 aa12.35□□□□□ -0.43
TCOF1-204ENST00000427724 ADRA2BP18089 450 aa12.35□□□□□ -0.43
TCOF1-204ENST00000427724 IRX3P78415 501 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-204ENST00000427724 TRIM5Q9C035 493 aa12.35□□□□□ -0.43
TCOF1-204ENST00000427724 USP25Q9UHP3 1055 aa12.35□□□□□ -0.43
TCOF1-204ENST00000427724 CDC42BPBQ9Y5S2 1711 aa12.35□□□□□ -0.43
TCOF1-204ENST00000427724 CDKL5O76039 1030 aa12.35□□□□□ -0.43
TCOF1-204ENST00000427724 ZFYP08048 801 aaPredicted RBP12.35□□□□□ -0.43
TCOF1-204ENST00000427724 MATR3P43243 847 aaKnown RBP eCLIP12.35□□□□□ -0.43
TCOF1-204ENST00000427724 MICU3Q86XE3 530 aa12.35□□□□□ -0.43
TCOF1-204ENST00000427724 XAGE2Q96GT9 111 aa12.35□□□□□ -0.43
TCOF1-204ENST00000427724 DBNDD2Q9BQY9 259 aa12.35□□□□□ -0.43
TCOF1-204ENST00000427724 GREM2Q9H772 168 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms