RNA–Protein interactions for RNA: ENST00000399455.2

USP47-203, Transcript of ubiquitin specific peptidase 47, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP47, Length 7,396 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-203ENST00000399455 NBPF3Q9H094 633 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 BACH1O14867 736 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 PRC1O43663 620 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 SPA17Q15506 151 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 NFKBIBQ15653 356 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 RMND1Q9NWS8 449 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 USP16Q9Y5T5 823 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 ADGRL2O95490 1459 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 POLR3AO14802 1390 aaPredicted RBP9.12□□□□□ -0.95
USP47-203ENST00000399455 ZNF354CQ86Y25 554 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 NEK1Q96PY6 1258 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 TTC12Q9H892 705 aaPredicted RBP9.12□□□□□ -0.95
USP47-203ENST00000399455 SAMD9LQ8IVG5 1584 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 GNA11P29992 359 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 TBC1D5Q92609 795 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 EXOC1Q9NV70 894 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 POLKQ9UBT6 870 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 PPEF1O14829 653 aaPredicted RBP9.12□□□□□ -0.95
USP47-203ENST00000399455 ZBTB43O43298 467 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 SEPT12Q8IYM1 358 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 MSANTD4Q8NCY6 345 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 PREX2Q70Z35 1606 aa9.12□□□□□ -0.95
USP47-203ENST00000399455 RNF113AO15541 343 aaKnown RBP9.11□□□□□ -0.95
USP47-203ENST00000399455 HOXB7P09629 217 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 UBA7P41226 1012 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 MRPS9P82933 396 aaKnown RBP9.11□□□□□ -0.95
USP47-203ENST00000399455 PRKG1Q13976 671 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 GADL1Q6ZQY3 521 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 CCDC144CPQ8IYA2 1237 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 BLMP54132 1417 aaPredicted RBP9.11□□□□□ -0.95
USP47-203ENST00000399455 ANXA1P04083 346 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 CCDC40Q4G0X9 1142 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 METTL22Q9BUU2 404 aaPredicted RBP9.11□□□□□ -0.95
USP47-203ENST00000399455 XPO5Q9HAV4 1204 aaKnown RBP eCLIP9.11□□□□□ -0.95
USP47-203ENST00000399455 DDX21Q9NR30 783 aaKnown RBP eCLIP9.11□□□□□ -0.95
USP47-203ENST00000399455 SAP30BPQ9UHR5 308 aaKnown RBP9.11□□□□□ -0.95
USP47-203ENST00000399455 COMMD10Q9Y6G5 202 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 CDC42BPGQ6DT37 1551 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 TRMT1LQ7Z2T5 733 aaKnown RBP9.11□□□□□ -0.95
USP47-203ENST00000399455 MICU3Q86XE3 530 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 NUP62CLQ9H1M0 184 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 WDR70Q9NW82 654 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 PRPF40AO75400 957 aaKnown RBP9.11□□□□□ -0.95
USP47-203ENST00000399455 CTNNA2P26232 953 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 CCDC83Q8IWF9 413 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 UPF3BQ9BZI7 483 aaKnown RBP9.11□□□□□ -0.95
USP47-203ENST00000399455 CARD10Q9BWT7 1032 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 GRIPAP1Q4V328 841 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 TEKT1Q969V4 418 aa9.11□□□□□ -0.95
USP47-203ENST00000399455 NR1I2O75469 434 aa9.1□□□□□ -0.95
USP47-203ENST00000399455 HAND2P61296 217 aa9.1□□□□□ -0.95
USP47-203ENST00000399455 AFF2P51816 1311 aa9.1□□□□□ -0.95
USP47-203ENST00000399455 RAD50Q92878 1312 aa9.1□□□□□ -0.95
USP47-203ENST00000399455 PATL2C9JE40 543 aaKnown RBP9.1□□□□□ -0.95
USP47-203ENST00000399455 RHPN1Q8TCX5 695 aa9.1□□□□□ -0.95
USP47-203ENST00000399455 AZI2Q9H6S1 392 aa9.1□□□□□ -0.95
USP47-203ENST00000399455 SUPT20HL1Q3ZLR7 823 aa9.1□□□□□ -0.95
USP47-203ENST00000399455 KMT5BQ4FZB7 885 aa9.1□□□□□ -0.95
USP47-203ENST00000399455 CCNA1P78396 465 aa9.1□□□□□ -0.95
USP47-203ENST00000399455 ZNF526Q8TF50 670 aaPredicted RBP9.1□□□□□ -0.95
USP47-203ENST00000399455 TCHPQ9BT92 498 aa9.1□□□□□ -0.95
USP47-203ENST00000399455 FAM13AO94988 1023 aa9.1□□□□□ -0.95
USP47-203ENST00000399455 CCDC112Q8NEF3 446 aa9.1□□□□□ -0.95
USP47-203ENST00000399455 GTPBP4Q9BZE4 634 aaKnown RBP9.1□□□□□ -0.95
USP47-203ENST00000399455 DEKP35659 375 aaKnown RBP9.09□□□□□ -0.95
USP47-203ENST00000399455 CCDC93Q567U6 631 aa9.09□□□□□ -0.95
USP47-203ENST00000399455 TTC41PQ6P2S7 1318 aa9.09□□□□□ -0.95
USP47-203ENST00000399455 MAGI3Q5TCQ9 1506 aa9.09□□□□□ -0.95
USP47-203ENST00000399455 DNM2P50570 870 aa9.09□□□□□ -0.95
USP47-203ENST00000399455 RTKN2Q8IZC4 609 aa9.09□□□□□ -0.95
USP47-203ENST00000399455 PTPDC1A2A3K4 754 aa9.09□□□□□ -0.95
USP47-203ENST00000399455 HCLS1P14317 486 aaPredicted RBP9.09□□□□□ -0.95
USP47-203ENST00000399455 CNNM3Q8NE01 707 aa9.09□□□□□ -0.95
USP47-203ENST00000399455 ZMYND15Q9H091 742 aa9.09□□□□□ -0.95
USP47-203ENST00000399455 RTN4Q9NQC3 1192 aaKnown RBP9.09□□□□□ -0.95
USP47-203ENST00000399455 CTAGE5O15320 804 aa9.09□□□□□ -0.95
USP47-203ENST00000399455 CCT2P78371 535 aaKnown RBP9.09□□□□□ -0.95
USP47-203ENST00000399455 TCERG1LQ5VWI1 586 aa9.09□□□□□ -0.95
USP47-203ENST00000399455 SCAND2PQ9GZW5 306 aaPredicted RBP9.09□□□□□ -0.95
USP47-203ENST00000399455 ZNF335Q9H4Z2 1342 aaPredicted RBP9.09□□□□□ -0.95
USP47-203ENST00000399455 CCDC91Q7Z6B0 441 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 MIGA1Q8NAN2 632 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 TRIM6Q9C030 488 aaPredicted RBP9.08□□□□□ -0.96
USP47-203ENST00000399455 LIMCH1Q9UPQ0 1083 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 RTL1A6NKG5 1358 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 HELBQ8NG08 1087 aaPredicted RBP9.08□□□□□ -0.96
USP47-203ENST00000399455 KRT2P35908 639 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 ATP8B2P98198 1209 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 CC2D2BQ6DHV5 1058 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 ANKARQ7Z5J8 1434 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 TTC16Q8NEE8 873 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 ERVK-7P63135 1459 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 SLC8A3P57103 927 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 CAVIN1Q6NZI2 390 aaKnown RBP9.08□□□□□ -0.96
USP47-203ENST00000399455 CNGA1P29973 690 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 ENOX2Q16206 610 aaKnown RBP9.08□□□□□ -0.96
USP47-203ENST00000399455 ATF5Q9Y2D1 282 aaPredicted RBP9.08□□□□□ -0.96
USP47-203ENST00000399455 IDEP14735 1019 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 LTKP29376 864 aa9.08□□□□□ -0.96
USP47-203ENST00000399455 USP8P40818 1118 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms