RNA–Protein interactions for RNA: ENST00000368019.5

USF1-201, Transcript of upstream transcription factor 1, humanhuman

TSL 5 BASIC

Gene USF1, Length 998 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-201ENST00000368019 RBSNQ9H1K0 784 aa13.87□□□□□ -0.19
USF1-201ENST00000368019 BABAM1Q9NWV8 329 aa13.87□□□□□ -0.19
USF1-201ENST00000368019 ZDHHC9Q9Y397 364 aa13.87□□□□□ -0.19
USF1-201ENST00000368019 PDE1AP54750 535 aa13.86□□□□□ -0.19
USF1-201ENST00000368019 PROSER3Q2NL68 480 aa13.86□□□□□ -0.19
USF1-201ENST00000368019 PARP10Q53GL7 1025 aa13.86□□□□□ -0.19
USF1-201ENST00000368019 FAM184AQ8NB25 1140 aa13.86□□□□□ -0.19
USF1-201ENST00000368019 RBM17Q96I25 401 aaKnown RBP13.86□□□□□ -0.19
USF1-201ENST00000368019 TSPYL4Q9UJ04 414 aa13.86□□□□□ -0.19
USF1-201ENST00000368019 TRPM7Q96QT4 1865 aa13.86□□□□□ -0.19
USF1-201ENST00000368019 VEGFBP49765 207 aa13.85□□□□□ -0.19
USF1-201ENST00000368019 MAP1SQ66K74 1059 aaPredicted RBP13.85□□□□□ -0.19
USF1-201ENST00000368019 PPP1R42Q7Z4L9 355 aa13.85□□□□□ -0.19
USF1-201ENST00000368019 CNTROBQ8N137 903 aa13.85□□□□□ -0.19
USF1-201ENST00000368019 TMEM87AQ8NBN3 555 aa13.85□□□□□ -0.19
USF1-201ENST00000368019 GPT2Q8TD30 523 aa13.85□□□□□ -0.19
USF1-201ENST00000368019 STAP2Q9UGK3 403 aa13.85□□□□□ -0.19
USF1-201ENST00000368019 CLEC11AQ9Y240 323 aa13.85□□□□□ -0.19
USF1-201ENST00000368019 TAF1P21675 1872 aa13.84□□□□□ -0.19
USF1-201ENST00000368019 RASSF10A6NK89 507 aa13.84□□□□□ -0.19
USF1-201ENST00000368019 ELL2O00472 640 aaPredicted RBP13.84□□□□□ -0.19
USF1-201ENST00000368019 PPEF1O14829 653 aaPredicted RBP13.84□□□□□ -0.19
USF1-201ENST00000368019 FOXN1O15353 648 aa13.84□□□□□ -0.19
USF1-201ENST00000368019 SCNN1DP51172 638 aa13.84□□□□□ -0.19
USF1-201ENST00000368019 EIF6P56537 245 aaKnown RBP13.84□□□□□ -0.19
USF1-201ENST00000368019 NLRP3Q96P20 1036 aa13.84□□□□□ -0.19
USF1-201ENST00000368019 DYNC1I1O14576 645 aa13.83□□□□□ -0.2
USF1-201ENST00000368019 PRPF40AO75400 957 aaKnown RBP13.83□□□□□ -0.2
USF1-201ENST00000368019 CAPN15O75808 1086 aa13.83□□□□□ -0.2
USF1-201ENST00000368019 ANXA1P04083 346 aa13.83□□□□□ -0.2
USF1-201ENST00000368019 GNAI3P08754 354 aa13.83□□□□□ -0.2
USF1-201ENST00000368019 EIF2S2P20042 333 aaKnown RBP13.83□□□□□ -0.2
USF1-201ENST00000368019 EPS15P42566 896 aa13.83□□□□□ -0.2
USF1-201ENST00000368019 LARGE2Q8N3Y3 721 aa13.83□□□□□ -0.2
USF1-201ENST00000368019 TMX3Q96JJ7 454 aa13.83□□□□□ -0.2
USF1-201ENST00000368019 MEIS3Q99687 375 aa13.83□□□□□ -0.2
USF1-201ENST00000368019 ESYT1Q9BSJ8 1104 aa13.83□□□□□ -0.2
USF1-201ENST00000368019 UTP14AQ9BVJ6 771 aaKnown RBP13.83□□□□□ -0.2
USF1-201ENST00000368019 VPS33BQ9H267 617 aa13.83□□□□□ -0.2
USF1-201ENST00000368019 ATP6V0A2Q9Y487 856 aa13.83□□□□□ -0.2
USF1-201ENST00000368019 GJA3Q9Y6H8 435 aa13.83□□□□□ -0.2
USF1-201ENST00000368019 LETM1O95202 739 aaPredicted RBP13.82□□□□□ -0.2
USF1-201ENST00000368019 GNAI2P04899 355 aa13.82□□□□□ -0.2
USF1-201ENST00000368019 ZGPATQ8N5A5 531 aaKnown RBP13.82□□□□□ -0.2
USF1-201ENST00000368019 RTFDC1Q9BY42 306 aaPredicted RBP13.82□□□□□ -0.2
USF1-201ENST00000368019 PRDM10Q9NQV6 1147 aa13.82□□□□□ -0.2
USF1-201ENST00000368019 WBP1LQ9NX94 342 aa13.82□□□□□ -0.2
USF1-201ENST00000368019 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.82□□□□□ -0.2
USF1-201ENST00000368019 TMEM63CQ9P1W3 806 aa13.82□□□□□ -0.2
USF1-201ENST00000368019 NCLP19338 710 aaKnown RBP13.81□□□□□ -0.2
USF1-201ENST00000368019 DEFB115Q30KQ5 88 aa13.81□□□□□ -0.2
USF1-201ENST00000368019 COPS6Q7L5N1 327 aa13.81□□□□□ -0.2
USF1-201ENST00000368019 NLRP10Q86W26 655 aa13.81□□□□□ -0.2
USF1-201ENST00000368019 OTUD7AQ8TE49 926 aaPredicted RBP13.81□□□□□ -0.2
USF1-201ENST00000368019 TSPY26PQ9H489 355 aa13.81□□□□□ -0.2
USF1-201ENST00000368019 DDX21Q9NR30 783 aaKnown RBP eCLIP13.81□□□□□ -0.2
USF1-201ENST00000368019 PPIP5K2O43314 1243 aa13.8□□□□□ -0.2
USF1-201ENST00000368019 BBOX1O75936 387 aa13.8□□□□□ -0.2
USF1-201ENST00000368019 PDIA4P13667 645 aaKnown RBP13.8□□□□□ -0.2
USF1-201ENST00000368019 LMOD1P29536 600 aaPredicted RBP13.8□□□□□ -0.2
USF1-201ENST00000368019 TCIRG1Q13488 830 aa13.8□□□□□ -0.2
USF1-201ENST00000368019 PKP1Q13835 747 aa13.8□□□□□ -0.2
USF1-201ENST00000368019 HSP90AB3PQ58FF7 597 aa13.8□□□□□ -0.2
USF1-201ENST00000368019 SASS6Q6UVJ0 657 aa13.8□□□□□ -0.2
USF1-201ENST00000368019 USP50Q70EL3 339 aaPredicted RBP13.8□□□□□ -0.2
USF1-201ENST00000368019 NIM1KQ8IY84 436 aa13.8□□□□□ -0.2
USF1-201ENST00000368019 XAGE3Q8WTP9 111 aa13.8□□□□□ -0.2
USF1-201ENST00000368019 DDX60Q8IY21 1712 aaKnown RBP13.8□□□□□ -0.2
USF1-201ENST00000368019 WDR33Q9C0J8 1336 aaKnown RBP13.8□□□□□ -0.2
USF1-201ENST00000368019 THSD7BQ9C0I4 1608 aa13.79□□□□□ -0.2
USF1-201ENST00000368019 LRRC37AA6NMS7 1700 aa13.79□□□□□ -0.2
USF1-201ENST00000368019 CTCFP49711 727 aaPredicted RBP13.79□□□□□ -0.2
USF1-201ENST00000368019 ATP8B2P98198 1209 aa13.79□□□□□ -0.2
USF1-201ENST00000368019 FMR1Q06787 632 aaKnown RBP eCLIP13.79□□□□□ -0.2
USF1-201ENST00000368019 CXCL9Q07325 125 aa13.79□□□□□ -0.2
USF1-201ENST00000368019 AOC3Q16853 763 aa13.79□□□□□ -0.2
USF1-201ENST00000368019 KRT24Q2M2I5 525 aa13.79□□□□□ -0.2
USF1-201ENST00000368019 SP8Q8IXZ3 490 aa13.79□□□□□ -0.2
USF1-201ENST00000368019 LRRCC1Q9C099 1032 aa13.79□□□□□ -0.2
USF1-201ENST00000368019 HCLS1P14317 486 aaPredicted RBP13.78□□□□□ -0.2
USF1-201ENST00000368019 MX1P20591 662 aa13.78□□□□□ -0.2
USF1-201ENST00000368019 CHMLP26374 656 aa13.78□□□□□ -0.2
USF1-201ENST00000368019 NEK4P51957 841 aa13.78□□□□□ -0.2
USF1-201ENST00000368019 AIMP1Q12904 312 aaKnown RBP13.78□□□□□ -0.2
USF1-201ENST00000368019 CST9Q5W186 159 aa13.78□□□□□ -0.2
USF1-201ENST00000368019 SUPT20HQ8NEM7 779 aa13.78□□□□□ -0.2
USF1-201ENST00000368019 NECTIN2Q92692 538 aa13.78□□□□□ -0.2
USF1-201ENST00000368019 GPRC5DQ9NZD1 345 aa13.78□□□□□ -0.2
USF1-201ENST00000368019 ZNRF3Q9ULT6 936 aa13.78□□□□□ -0.2
USF1-201ENST00000368019 DUOX1Q9NRD9 1551 aa13.78□□□□□ -0.2
USF1-201ENST00000368019 SYCE3A1L190 88 aa13.77□□□□□ -0.21
USF1-201ENST00000368019 SMARCA5O60264 1052 aaPredicted RBP13.77□□□□□ -0.21
USF1-201ENST00000368019 RAB11FIP3O75154 756 aa13.77□□□□□ -0.21
USF1-201ENST00000368019 KIAA2012Q0VF49 1180 aa13.77□□□□□ -0.21
USF1-201ENST00000368019 SH3TC1Q8TE82 1336 aa13.77□□□□□ -0.21
USF1-201ENST00000368019 AIDAQ96BJ3 306 aa13.77□□□□□ -0.21
USF1-201ENST00000368019 TMX4Q9H1E5 349 aaPredicted RBP13.77□□□□□ -0.21
USF1-201ENST00000368019 ADARB2Q9NS39 739 aaKnown RBP13.77□□□□□ -0.21
USF1-201ENST00000368019 PGAP2Q9UHJ9 254 aa13.77□□□□□ -0.21
USF1-201ENST00000368019 POLR2AP24928 1970 aaKnown RBP13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms