RNA–Protein interactions for RNA: ENST00000343524.9

ATG4A-201, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 2

Gene ATG4A, Length 1,941 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-201ENST00000343524 RIMS2Q9UQ26 1411 aa9.48□□□□□ -0.89
ATG4A-201ENST00000343524 USP27XA6NNY8 438 aa9.47□□□□□ -0.89
ATG4A-201ENST00000343524 DIAPH1O60610 1272 aaKnown RBP9.47□□□□□ -0.89
ATG4A-201ENST00000343524 SMC2O95347 1197 aa9.47□□□□□ -0.89
ATG4A-201ENST00000343524 CHMLP26374 656 aa9.47□□□□□ -0.89
ATG4A-201ENST00000343524 CORO7P57737 925 aa9.47□□□□□ -0.89
ATG4A-201ENST00000343524 ST5P78524 1137 aa9.47□□□□□ -0.89
ATG4A-201ENST00000343524 TWISTNBQ3B726 338 aaPredicted RBP9.47□□□□□ -0.89
ATG4A-201ENST00000343524 HSP90AB3PQ58FF7 597 aa9.47□□□□□ -0.89
ATG4A-201ENST00000343524 C16orf71Q8IYS4 520 aaPredicted RBP9.47□□□□□ -0.89
ATG4A-201ENST00000343524 PPP1R13BQ96KQ4 1090 aa9.47□□□□□ -0.89
ATG4A-201ENST00000343524 UTP14AQ9BVJ6 771 aaKnown RBP9.47□□□□□ -0.89
ATG4A-201ENST00000343524 NAT10Q9H0A0 1025 aaKnown RBP9.47□□□□□ -0.89
ATG4A-201ENST00000343524 ACBD3Q9H3P7 528 aa9.47□□□□□ -0.89
ATG4A-201ENST00000343524 SPON1Q9HCB6 807 aa9.47□□□□□ -0.89
ATG4A-201ENST00000343524 PALD1Q9ULE6 856 aa9.47□□□□□ -0.89
ATG4A-201ENST00000343524 MTMR6Q9Y217 621 aa9.47□□□□□ -0.89
ATG4A-201ENST00000343524 AMOTL2Q9Y2J4 779 aa9.47□□□□□ -0.89
ATG4A-201ENST00000343524 BECN2A8MW95 431 aa9.46□□□□□ -0.89
ATG4A-201ENST00000343524 GIGYF1O75420 1035 aaPredicted RBP9.46□□□□□ -0.89
ATG4A-201ENST00000343524 TADA3O75528 432 aa9.46□□□□□ -0.89
ATG4A-201ENST00000343524 TBC1D8O95759 1140 aa9.46□□□□□ -0.89
ATG4A-201ENST00000343524 MAP2K2P36507 400 aa9.46□□□□□ -0.89
ATG4A-201ENST00000343524 GYS2P54840 703 aa9.46□□□□□ -0.89
ATG4A-201ENST00000343524 SETQ01105 290 aaPredicted RBP9.46□□□□□ -0.89
ATG4A-201ENST00000343524 CT47A1Q5JQC4 288 aaPredicted RBP9.46□□□□□ -0.89
ATG4A-201ENST00000343524 CC2D1AQ6P1N0 951 aaPredicted RBP9.46□□□□□ -0.89
ATG4A-201ENST00000343524 PACS2Q86VP3 889 aa9.46□□□□□ -0.89
ATG4A-201ENST00000343524 ERC1Q8IUD2 1116 aa9.46□□□□□ -0.89
ATG4A-201ENST00000343524 OTUD7AQ8TE49 926 aaPredicted RBP9.46□□□□□ -0.89
ATG4A-201ENST00000343524 UPF3BQ9BZI7 483 aaKnown RBP9.46□□□□□ -0.89
ATG4A-201ENST00000343524 LCMT1Q9UIC8 334 aa9.46□□□□□ -0.89
ATG4A-201ENST00000343524 ADAM21Q9UKJ8 722 aa9.46□□□□□ -0.89
ATG4A-201ENST00000343524 EVC2Q86UK5 1308 aa9.46□□□□□ -0.89
ATG4A-201ENST00000343524 KIAA0232Q92628 1395 aa9.46□□□□□ -0.89
ATG4A-201ENST00000343524 PTPRUQ92729 1446 aa9.46□□□□□ -0.89
ATG4A-201ENST00000343524 GOLGA6L9A6NEM1 432 aa9.46□□□□□ -0.9
ATG4A-201ENST00000343524 EIF3CLB5ME19 914 aaKnown RBP9.46□□□□□ -0.9
ATG4A-201ENST00000343524 GJB2P29033 226 aa9.46□□□□□ -0.9
ATG4A-201ENST00000343524 TDO2P48775 406 aa9.46□□□□□ -0.9
ATG4A-201ENST00000343524 EIF5P55010 431 aaKnown RBP9.46□□□□□ -0.9
ATG4A-201ENST00000343524 ETF1P62495 437 aaKnown RBP9.46□□□□□ -0.9
ATG4A-201ENST00000343524 BRD3Q15059 726 aa9.46□□□□□ -0.9
ATG4A-201ENST00000343524 CFAP70Q5T0N1 1121 aa9.46□□□□□ -0.9
ATG4A-201ENST00000343524 CHMP4CQ96CF2 233 aa9.46□□□□□ -0.9
ATG4A-201ENST00000343524 TTC14Q96N46 770 aa9.46□□□□□ -0.9
ATG4A-201ENST00000343524 EIF3CQ99613 913 aaKnown RBP9.46□□□□□ -0.9
ATG4A-201ENST00000343524 DACT1Q9NYF0 836 aa9.46□□□□□ -0.9
ATG4A-201ENST00000343524 CCDC151A5D8V7 595 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 KCNQ2O43526 872 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 HSP90B1P14625 803 aaKnown RBP9.45□□□□□ -0.9
ATG4A-201ENST00000343524 SFPQP23246 707 aaKnown RBP eCLIP9.45□□□□□ -0.9
ATG4A-201ENST00000343524 EZH2Q15910 746 aaKnown RBP9.45□□□□□ -0.9
ATG4A-201ENST00000343524 NFE2L2Q16236 605 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 FCHSD1Q86WN1 690 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 HOMER1Q86YM7 354 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 REXO1L1PQ8IX06 675 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 CNPY4Q8N129 248 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 DNAJC25Q9H1X3 360 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 SLC12A5Q9H2X9 1139 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 ZSCAN16Q9H4T2 348 aaPredicted RBP9.45□□□□□ -0.9
ATG4A-201ENST00000343524 TOMM22Q9NS69 142 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 TRMT1Q9NXH9 659 aaKnown RBP9.45□□□□□ -0.9
ATG4A-201ENST00000343524 KIF20BQ96Q89 1820 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 C1orf167Q5SNV9 1468 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 SALL3Q9BXA9 1300 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 CHD4Q14839 1912 aa9.45□□□□□ -0.9
ATG4A-201ENST00000343524 A0A087WUV0 522 aaPredicted RBP9.44□□□□□ -0.9
ATG4A-201ENST00000343524 VPS37CA5D8V6 355 aaPredicted RBP9.44□□□□□ -0.9
ATG4A-201ENST00000343524 KIF3CO14782 793 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 NPHP1O15259 732 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 ERLIN1O75477 346 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 PSME1Q06323 249 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 CEP57L1Q8IYX8 460 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 RABGGTAQ92696 567 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 SPATA32Q96LK8 384 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 MPHOSPH8Q99549 860 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 ANO10Q9NW15 660 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 RAI14Q9P0K7 980 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 ITSN1Q15811 1721 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 SRGAP3O43295 1099 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 ZNF853P0CG23 659 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 AK2P54819 239 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 EVCP57679 992 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 IQCB1Q15051 598 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 VPS72Q15906 364 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 CAMK4Q16566 473 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 NBPF20Q3BBV1 942 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 VPS53Q5VIR6 699 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 TADA2BQ86TJ2 420 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 TTC6Q86TZ1 520 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 CKAP2LQ8IYA6 745 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 DNAAF4Q8WXU2 420 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 CAMKK2Q96RR4 588 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 EXOC6BQ9Y2D4 811 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 TULP4Q9NRJ4 1543 aa9.44□□□□□ -0.9
ATG4A-201ENST00000343524 TNS1Q9HBL0 1735 aaKnown RBP9.43□□□□□ -0.9
ATG4A-201ENST00000343524 ZSCAN12O43309 604 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 TUBBP07437 444 aa9.43□□□□□ -0.9
ATG4A-201ENST00000343524 LIG1P18858 919 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms