RNA–Protein interactions for RNA: ENST00000334490.5

C9orf47-201, Transcript of chromosome 9 open reading frame 47, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene C9orf47, Length 4,829 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf47-201ENST00000334490 NAPAP54920 295 aa17.3■□□□□ 0.36
C9orf47-201ENST00000334490 LPIN2Q92539 896 aa17.3■□□□□ 0.36
C9orf47-201ENST00000334490 NEURL1BA8MQ27 555 aa17.3■□□□□ 0.36
C9orf47-201ENST00000334490 AMPD3Q01432 767 aa17.3■□□□□ 0.36
C9orf47-201ENST00000334490 OTUD7AQ8TE49 926 aaPredicted RBP17.3■□□□□ 0.36
C9orf47-201ENST00000334490 MPHOSPH6Q99547 160 aaKnown RBP17.3■□□□□ 0.36
C9orf47-201ENST00000334490 DDX19AQ9NUU7 478 aaKnown RBP17.3■□□□□ 0.36
C9orf47-201ENST00000334490 RAD50Q92878 1312 aa17.29■□□□□ 0.36
C9orf47-201ENST00000334490 USP6P35125 1406 aa17.29■□□□□ 0.36
C9orf47-201ENST00000334490 BIN1O00499 593 aa17.29■□□□□ 0.36
C9orf47-201ENST00000334490 MSL1Q68DK7 614 aa17.29■□□□□ 0.36
C9orf47-201ENST00000334490 RPS8P62241 208 aaKnown RBP17.29■□□□□ 0.36
C9orf47-201ENST00000334490 MYOM2P54296 1465 aa17.29■□□□□ 0.36
C9orf47-201ENST00000334490 CALM1P0DP23 149 aa17.29■□□□□ 0.36
C9orf47-201ENST00000334490 CALM2P0DP24 149 aa17.29■□□□□ 0.36
C9orf47-201ENST00000334490 CALM3P0DP25 149 aa17.29■□□□□ 0.36
C9orf47-201ENST00000334490 ASAP1Q9ULH1 1129 aa17.29■□□□□ 0.36
C9orf47-201ENST00000334490 AATKQ6ZMQ8 1374 aa17.29■□□□□ 0.36
C9orf47-201ENST00000334490 KDM6BO15054 1643 aa17.29■□□□□ 0.36
C9orf47-201ENST00000334490 DHX32Q7L7V1 743 aaKnown RBP17.28■□□□□ 0.36
C9orf47-201ENST00000334490 ACBD3Q9H3P7 528 aa17.28■□□□□ 0.36
C9orf47-201ENST00000334490 WDR17Q8IZU2 1322 aa17.28■□□□□ 0.36
C9orf47-201ENST00000334490 FKBP15Q5T1M5 1219 aa17.28■□□□□ 0.36
C9orf47-201ENST00000334490 FAM182BQ5T319 152 aa17.28■□□□□ 0.36
C9orf47-201ENST00000334490 WDR66Q8TBY9 1149 aa17.28■□□□□ 0.36
C9orf47-201ENST00000334490 HELLSQ9NRZ9 838 aa17.28■□□□□ 0.36
C9orf47-201ENST00000334490 SAP30BPQ9UHR5 308 aaKnown RBP17.28■□□□□ 0.36
C9orf47-201ENST00000334490 MYO6Q9UM54 1294 aa17.28■□□□□ 0.36
C9orf47-201ENST00000334490 CDR1P51861 262 aa17.28■□□□□ 0.36
C9orf47-201ENST00000334490 HSP90B2PQ58FF3 399 aa17.28■□□□□ 0.36
C9orf47-201ENST00000334490 SMARCC2Q8TAQ2 1214 aa17.28■□□□□ 0.36
C9orf47-201ENST00000334490 EPB41L2O43491 1005 aaKnown RBP17.27■□□□□ 0.36
C9orf47-201ENST00000334490 FLAD1Q8NFF5 587 aa17.27■□□□□ 0.36
C9orf47-201ENST00000334490 FGFR1OPO95684 399 aaKnown RBP17.27■□□□□ 0.36
C9orf47-201ENST00000334490 ZSCAN22P10073 491 aaPredicted RBP17.27■□□□□ 0.36
C9orf47-201ENST00000334490 APOBRQ0VD83 1088 aa17.27■□□□□ 0.36
C9orf47-201ENST00000334490 PLS1Q14651 629 aa17.27■□□□□ 0.36
C9orf47-201ENST00000334490 CCDC102BQ68D86 513 aa17.27■□□□□ 0.36
C9orf47-201ENST00000334490 ZNF397Q8NF99 534 aaPredicted RBP17.27■□□□□ 0.36
C9orf47-201ENST00000334490 ABCC3O15438 1527 aa17.27■□□□□ 0.35
C9orf47-201ENST00000334490 KDM5AP29375 1690 aaKnown RBP17.27■□□□□ 0.35
C9orf47-201ENST00000334490 RBM27Q9P2N5 1060 aaKnown RBP17.27■□□□□ 0.35
C9orf47-201ENST00000334490 CCDC129Q6ZRS4 1044 aa17.26■□□□□ 0.35
C9orf47-201ENST00000334490 ARMT1Q9H993 441 aa17.26■□□□□ 0.35
C9orf47-201ENST00000334490 ERBB3P21860 1342 aa17.26■□□□□ 0.35
C9orf47-201ENST00000334490 ALDH1B1P30837 517 aa17.26■□□□□ 0.35
C9orf47-201ENST00000334490 BRINP3Q76B58 766 aa17.26■□□□□ 0.35
C9orf47-201ENST00000334490 ZKSCAN3Q9BRR0 538 aa17.26■□□□□ 0.35
C9orf47-201ENST00000334490 RTL9Q8NET4 1388 aa17.26■□□□□ 0.35
C9orf47-201ENST00000334490 CCDC181Q5TID7 509 aa17.26■□□□□ 0.35
C9orf47-201ENST00000334490 IGSF1Q8N6C5 1336 aa17.26■□□□□ 0.35
C9orf47-201ENST00000334490 BMP15O95972 392 aa17.26■□□□□ 0.35
C9orf47-201ENST00000334490 TRIM21P19474 475 aaKnown RBP17.26■□□□□ 0.35
C9orf47-201ENST00000334490 CACNA2D4Q7Z3S7 1137 aa17.26■□□□□ 0.35
C9orf47-201ENST00000334490 APPBP2Q92624 585 aa17.26■□□□□ 0.35
C9orf47-201ENST00000334490 PYM1Q9BRP8 204 aaKnown RBP17.26■□□□□ 0.35
C9orf47-201ENST00000334490 TRIM37O94972 964 aa17.25■□□□□ 0.35
C9orf47-201ENST00000334490 RXRAP19793 462 aa17.25■□□□□ 0.35
C9orf47-201ENST00000334490 EIF6P56537 245 aaKnown RBP17.25■□□□□ 0.35
C9orf47-201ENST00000334490 ERMNQ8TAM6 284 aa17.25■□□□□ 0.35
C9orf47-201ENST00000334490 RRP36Q96EU6 259 aaKnown RBP17.25■□□□□ 0.35
C9orf47-201ENST00000334490 C6orf50Q9HD87 102 aa17.25■□□□□ 0.35
C9orf47-201ENST00000334490 MROH5Q6ZUA9 1318 aa17.25■□□□□ 0.35
C9orf47-201ENST00000334490 ATP7BP35670 1465 aa17.25■□□□□ 0.35
C9orf47-201ENST00000334490 AK2P54819 239 aa17.25■□□□□ 0.35
C9orf47-201ENST00000334490 ZNF772Q68DY9 489 aaPredicted RBP17.25■□□□□ 0.35
C9orf47-201ENST00000334490 ERBB4Q15303 1308 aa17.25■□□□□ 0.35
C9orf47-201ENST00000334490 POTEJP0CG39 1038 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 RXRBP28702 533 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 RAB3GAP1Q15042 981 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 HSP90AA2PQ14568 343 aaPredicted RBP17.24■□□□□ 0.35
C9orf47-201ENST00000334490 USP44Q9H0E7 712 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 NDUFB9Q9Y6M9 179 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 MAST3O60307 1309 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 CTSWP56202 376 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 TCERG1LQ5VWI1 586 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 FAM196AQ6ZSG2 479 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 KIAA1328Q86T90 577 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 SUPT20HQ8NEM7 779 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 DESP17661 470 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 SFPQP23246 707 aaKnown RBP eCLIP17.24■□□□□ 0.35
C9orf47-201ENST00000334490 CALML3P27482 149 aa17.24■□□□□ 0.35
C9orf47-201ENST00000334490 SPDYE3A6NKU9 549 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 GPAA1O43292 621 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 ARHGAP29Q52LW3 1261 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 USPL1Q5W0Q7 1092 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 ISM2Q6H9L7 571 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 KANK3Q6NY19 840 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 ZMYM4Q5VZL5 1548 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 PDE6BP35913 854 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 KBTBD3Q8NAB2 608 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 ECM2O94769 699 aaPredicted RBP17.23■□□□□ 0.35
C9orf47-201ENST00000334490 SSR1P43307 286 aaKnown RBP17.23■□□□□ 0.35
C9orf47-201ENST00000334490 CRKLP46109 303 aaKnown RBP17.23■□□□□ 0.35
C9orf47-201ENST00000334490 UBE2HP62256 183 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 C8orf34Q49A92 452 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 STXBP4Q6ZWJ1 553 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 AATFQ9NY61 560 aaKnown RBP eCLIP17.23■□□□□ 0.35
C9orf47-201ENST00000334490 BRPF3Q9ULD4 1205 aa17.23■□□□□ 0.35
C9orf47-201ENST00000334490 SYKP43405 635 aa17.23■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms