RNA–Protein interactions for RNA: ENST00000284767.9

PDLIM3-201, Transcript of PDZ and LIM domain 3, humanhuman

TSL 5 BASIC

Gene PDLIM3, Length 2,589 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-201ENST00000284767 SCARF1Q14162 830 aa21.71■■□□□ 1.07
PDLIM3-201ENST00000284767 KBTBD3Q8NAB2 608 aa21.71■■□□□ 1.07
PDLIM3-201ENST00000284767 USP25Q9UHP3 1055 aa21.71■■□□□ 1.07
PDLIM3-201ENST00000284767 CNPY2Q9Y2B0 182 aa21.71■■□□□ 1.07
PDLIM3-201ENST00000284767 ANKRD18BA2A2Z9 1011 aa21.71■■□□□ 1.07
PDLIM3-201ENST00000284767 TAF5LO75529 589 aa21.71■■□□□ 1.07
PDLIM3-201ENST00000284767 HMGN5P82970 282 aaKnown RBP21.71■■□□□ 1.07
PDLIM3-201ENST00000284767 METTL24Q5JXM2 366 aa21.71■■□□□ 1.07
PDLIM3-201ENST00000284767 PI16Q6UXB8 463 aa21.71■■□□□ 1.07
PDLIM3-201ENST00000284767 CNNM1Q9NRU3 951 aa21.71■■□□□ 1.07
PDLIM3-201ENST00000284767 LIMCH1Q9UPQ0 1083 aa21.71■■□□□ 1.07
PDLIM3-201ENST00000284767 SLC27A2O14975 620 aa21.7■■□□□ 1.06
PDLIM3-201ENST00000284767 STX6O43752 255 aa21.7■■□□□ 1.06
PDLIM3-201ENST00000284767 FKBP4Q02790 459 aaKnown RBP eCLIP21.7■■□□□ 1.06
PDLIM3-201ENST00000284767 RUFY3Q7L099 469 aa21.7■■□□□ 1.06
PDLIM3-201ENST00000284767 SMARCC1Q92922 1105 aaPredicted RBP21.7■■□□□ 1.06
PDLIM3-201ENST00000284767 NIP7Q9Y221 180 aaKnown RBP eCLIP21.7■■□□□ 1.06
PDLIM3-201ENST00000284767 ADCY5O95622 1261 aa21.7■■□□□ 1.06
PDLIM3-201ENST00000284767 GORABQ5T7V8 394 aa21.7■■□□□ 1.06
PDLIM3-201ENST00000284767 DNTTIP2Q5QJE6 756 aaKnown RBP21.69■■□□□ 1.06
PDLIM3-201ENST00000284767 HELBQ8NG08 1087 aaPredicted RBP21.69■■□□□ 1.06
PDLIM3-201ENST00000284767 TCEANC2Q96MN5 208 aa21.69■■□□□ 1.06
PDLIM3-201ENST00000284767 MYH3P11055 1940 aa21.69■■□□□ 1.06
PDLIM3-201ENST00000284767 NOLC1Q14978 699 aaKnown RBP eCLIP21.69■■□□□ 1.06
PDLIM3-201ENST00000284767 LARGE1O95461 756 aa21.68■■□□□ 1.06
PDLIM3-201ENST00000284767 F13A1P00488 732 aa21.68■■□□□ 1.06
PDLIM3-201ENST00000284767 SYT1P21579 422 aa21.68■■□□□ 1.06
PDLIM3-201ENST00000284767 HSPA1LP34931 641 aa21.68■■□□□ 1.06
PDLIM3-201ENST00000284767 KCNB2Q92953 911 aa21.68■■□□□ 1.06
PDLIM3-201ENST00000284767 SEC31BQ9NQW1 1179 aa21.68■■□□□ 1.06
PDLIM3-201ENST00000284767 SH3TC1Q8TE82 1336 aa21.68■■□□□ 1.06
PDLIM3-201ENST00000284767 SNAP23O00161 211 aa21.68■■□□□ 1.06
PDLIM3-201ENST00000284767 TTC39AQ5SRH9 613 aa21.68■■□□□ 1.06
PDLIM3-201ENST00000284767 UTP14AQ9BVJ6 771 aaKnown RBP21.67■■□□□ 1.06
PDLIM3-201ENST00000284767 SMC3Q9UQE7 1217 aa21.67■■□□□ 1.06
PDLIM3-201ENST00000284767 ZKSCAN1P17029 563 aaPredicted RBP21.67■■□□□ 1.06
PDLIM3-201ENST00000284767 GTF2F1P35269 517 aaKnown RBP eCLIP21.67■■□□□ 1.06
PDLIM3-201ENST00000284767 ATP2B3Q16720 1220 aa21.67■■□□□ 1.06
PDLIM3-201ENST00000284767 MEX3CQ5U5Q3 659 aaKnown RBP21.67■■□□□ 1.06
PDLIM3-201ENST00000284767 VPS53Q5VIR6 699 aa21.67■■□□□ 1.06
PDLIM3-201ENST00000284767 SPTLC3Q9NUV7 552 aa21.67■■□□□ 1.06
PDLIM3-201ENST00000284767 FBXO3Q9UK99 471 aa21.67■■□□□ 1.06
PDLIM3-201ENST00000284767 AKAP2Q9Y2D5 859 aa21.67■■□□□ 1.06
PDLIM3-201ENST00000284767 KDM4AO75164 1064 aa21.66■■□□□ 1.06
PDLIM3-201ENST00000284767 MCMDC2Q4G0Z9 681 aa21.66■■□□□ 1.06
PDLIM3-201ENST00000284767 CCDC158Q5M9N0 1113 aa21.66■■□□□ 1.06
PDLIM3-201ENST00000284767 ZSWIM6Q9HCJ5 1215 aa21.66■■□□□ 1.06
PDLIM3-201ENST00000284767 PDRG1Q9NUG6 133 aa21.66■■□□□ 1.06
PDLIM3-201ENST00000284767 RREB1Q92766 1687 aa21.66■■□□□ 1.06
PDLIM3-201ENST00000284767 SPATA31A6Q5VVP1 1343 aa21.66■■□□□ 1.06
PDLIM3-201ENST00000284767 VGLL2Q8N8G2 317 aa21.65■■□□□ 1.06
PDLIM3-201ENST00000284767 CERKQ8TCT0 537 aa21.65■■□□□ 1.06
PDLIM3-201ENST00000284767 NTSR2O95665 410 aa21.65■■□□□ 1.06
PDLIM3-201ENST00000284767 ZAP70P43403 619 aa21.65■■□□□ 1.06
PDLIM3-201ENST00000284767 BICDL1Q6ZP65 573 aa21.65■■□□□ 1.06
PDLIM3-201ENST00000284767 FUCA2Q9BTY2 467 aa21.65■■□□□ 1.06
PDLIM3-201ENST00000284767 CYP46A1Q9Y6A2 500 aa21.65■■□□□ 1.06
PDLIM3-201ENST00000284767 COL5A3P25940 1745 aaPredicted RBP21.65■■□□□ 1.06
PDLIM3-201ENST00000284767 SMAP1Q8IYB5 467 aaPredicted RBP21.64■■□□□ 1.06
PDLIM3-201ENST00000284767 A0A0G2JLW4 131 aa21.63■■□□□ 1.05
PDLIM3-201ENST00000284767 AMIGO3Q86WK7 504 aa21.63■■□□□ 1.05
PDLIM3-201ENST00000284767 ZNF830Q96NB3 372 aaPredicted RBP21.63■■□□□ 1.05
PDLIM3-201ENST00000284767 TPM3P06753 285 aa21.63■■□□□ 1.05
PDLIM3-201ENST00000284767 CCDC94Q9BW85 323 aaPredicted RBP21.63■■□□□ 1.05
PDLIM3-201ENST00000284767 TTC12Q9H892 705 aaPredicted RBP21.63■■□□□ 1.05
PDLIM3-201ENST00000284767 RFX7Q2KHR2 1363 aa21.63■■□□□ 1.05
PDLIM3-201ENST00000284767 FIBPO43427 364 aa21.62■■□□□ 1.05
PDLIM3-201ENST00000284767 ZSCAN31Q96LW9 406 aaPredicted RBP21.62■■□□□ 1.05
PDLIM3-201ENST00000284767 TM6SF1Q9BZW5 370 aa21.62■■□□□ 1.05
PDLIM3-201ENST00000284767 AFF2P51816 1311 aa21.62■■□□□ 1.05
PDLIM3-201ENST00000284767 PDE8BO95263 885 aa21.62■■□□□ 1.05
PDLIM3-201ENST00000284767 MCAMP43121 646 aa21.62■■□□□ 1.05
PDLIM3-201ENST00000284767 GJD4Q96KN9 370 aaPredicted RBP21.62■■□□□ 1.05
PDLIM3-201ENST00000284767 ZMYM1Q5SVZ6 1142 aa21.61■■□□□ 1.05
PDLIM3-201ENST00000284767 SH2B1Q9NRF2 756 aaPredicted RBP21.61■■□□□ 1.05
PDLIM3-201ENST00000284767 CICQ96RK0 1608 aaPredicted RBP21.61■■□□□ 1.05
PDLIM3-201ENST00000284767 M0R2C6 588 aa21.61■■□□□ 1.05
PDLIM3-201ENST00000284767 CYP21A2P08686 494 aa21.61■■□□□ 1.05
PDLIM3-201ENST00000284767 PARP10Q53GL7 1025 aa21.61■■□□□ 1.05
PDLIM3-201ENST00000284767 RNF20Q5VTR2 975 aa21.61■■□□□ 1.05
PDLIM3-201ENST00000284767 USPL1Q5W0Q7 1092 aa21.61■■□□□ 1.05
PDLIM3-201ENST00000284767 C3orf67Q6ZVT6 689 aa21.61■■□□□ 1.05
PDLIM3-201ENST00000284767 SRP68Q9UHB9 627 aaKnown RBP21.61■■□□□ 1.05
PDLIM3-201ENST00000284767 MAST3O60307 1309 aa21.61■■□□□ 1.05
PDLIM3-201ENST00000284767 COL4A1P02462 1669 aa21.6■■□□□ 1.05
PDLIM3-201ENST00000284767 RNF113AO15541 343 aaKnown RBP21.6■■□□□ 1.05
PDLIM3-201ENST00000284767 OSBP2Q969R2 916 aa21.6■■□□□ 1.05
PDLIM3-201ENST00000284767 CCDC83Q8IWF9 413 aa21.6■■□□□ 1.05
PDLIM3-201ENST00000284767 BTAF1O14981 1849 aa21.6■■□□□ 1.05
PDLIM3-201ENST00000284767 PDIA4P13667 645 aaKnown RBP21.59■■□□□ 1.05
PDLIM3-201ENST00000284767 PHKA1P46020 1223 aa21.59■■□□□ 1.05
PDLIM3-201ENST00000284767 ST3GAL1Q11201 340 aa21.59■■□□□ 1.05
PDLIM3-201ENST00000284767 NECAB1Q8N987 351 aa21.59■■□□□ 1.05
PDLIM3-201ENST00000284767 PPIL4Q8WUA2 492 aaKnown RBP eCLIP21.59■■□□□ 1.05
PDLIM3-201ENST00000284767 MTMR6Q9Y217 621 aa21.59■■□□□ 1.05
PDLIM3-201ENST00000284767 DDX60Q8IY21 1712 aaKnown RBP21.59■■□□□ 1.05
PDLIM3-201ENST00000284767 THSD7AQ9UPZ6 1657 aa21.59■■□□□ 1.05
PDLIM3-201ENST00000284767 GJB2P29033 226 aa21.59■■□□□ 1.05
PDLIM3-201ENST00000284767 ME3Q16798 604 aa21.59■■□□□ 1.05
PDLIM3-201ENST00000284767 ERFEQ4G0M1 354 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms