RNA–Protein interactions for RNA: ENST00000261443.9

CSDE1-201, Transcript of cold shock domain containing E1, humanhuman

TSL 1 (best) BASIC

Gene CSDE1, Length 3,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSDE1-201ENST00000261443 PRR36Q9H6K5 1346 aa8.37□□□□□ -1.07
CSDE1-201ENST00000261443 USP42Q9H9J4 1324 aaKnown RBP8.37□□□□□ -1.07
CSDE1-201ENST00000261443 XRN1Q8IZH2 1706 aaKnown RBP8.37□□□□□ -1.07
CSDE1-201ENST00000261443 MARF1Q9Y4F3 1742 aaKnown RBP8.37□□□□□ -1.07
CSDE1-201ENST00000261443 CCDC151A5D8V7 595 aa8.37□□□□□ -1.07
CSDE1-201ENST00000261443 HSP90B1P14625 803 aaKnown RBP8.37□□□□□ -1.07
CSDE1-201ENST00000261443 ADD1P35611 737 aaKnown RBP8.37□□□□□ -1.07
CSDE1-201ENST00000261443 GNG11P61952 73 aa8.37□□□□□ -1.07
CSDE1-201ENST00000261443 APOBRQ0VD83 1088 aa8.37□□□□□ -1.07
CSDE1-201ENST00000261443 CLASRPQ8N2M8 674 aaKnown RBP8.37□□□□□ -1.07
CSDE1-201ENST00000261443 ECHDC1Q9NTX5 307 aa8.37□□□□□ -1.07
CSDE1-201ENST00000261443 CRYBG1Q9Y4K1 1723 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 MAP2K7O14733 419 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 FOXO3O43524 673 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 TXLNAP40222 546 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 BRD3Q15059 726 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 TSGA10IPQ3SY00 556 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 BPIFA3Q9BQP9 254 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 MRFAP1Q9Y605 127 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 TAF6LQ9Y6J9 622 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 ITSN1Q15811 1721 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 ADAMTS13Q76LX8 1427 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 VWA3AA6NCI4 1184 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 RPS6KA5O75582 802 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 EIF3JO75822 258 aaKnown RBP8.36□□□□□ -1.07
CSDE1-201ENST00000261443 LMOD1P29536 600 aaPredicted RBP8.36□□□□□ -1.07
CSDE1-201ENST00000261443 CORO7P57737 925 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 FANCCQ00597 558 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 NMIQ13287 307 aaPredicted RBP8.36□□□□□ -1.07
CSDE1-201ENST00000261443 ZNF396Q96N95 335 aaPredicted RBP8.36□□□□□ -1.07
CSDE1-201ENST00000261443 USP28Q96RU2 1077 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 WDR24Q96S15 920 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 KIAA1468Q9P260 1216 aa8.36□□□□□ -1.07
CSDE1-201ENST00000261443 MKRN1Q9UHC7 482 aaKnown RBP8.36□□□□□ -1.07
CSDE1-201ENST00000261443 ANKRD65E5RJM6 399 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 HIP1O00291 1037 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 BIN1O00499 593 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 E2F4Q16254 413 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 HDXQ7Z353 690 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 FCHSD1Q86WN1 690 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 PPP2R2CQ9Y2T4 447 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 RIMS1Q86UR5 1692 aaKnown RBP8.35□□□□□ -1.07
CSDE1-201ENST00000261443 A0A1B0GVL5 298 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 CLGNO14967 610 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 CCDC91Q7Z6B0 441 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 FMR1NBQ8N0W7 255 aaPredicted RBP8.35□□□□□ -1.07
CSDE1-201ENST00000261443 MRPS27Q92552 414 aaKnown RBP8.35□□□□□ -1.07
CSDE1-201ENST00000261443 FAN1Q9Y2M0 1017 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 ERC1Q8IUD2 1116 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 ZSWIM4Q9H7M6 989 aa8.35□□□□□ -1.07
CSDE1-201ENST00000261443 ROBO2Q9HCK4 1378 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 GOLGA6L9A6NEM1 432 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 N4BP1O75113 896 aaKnown RBP8.34□□□□□ -1.07
CSDE1-201ENST00000261443 SERPINC1P01008 464 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 UBASH3AP57075 661 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 GOLGA8FQ08AF8 430 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 GOLGA8DPQ0D2H9 430 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 AXDND1Q5T1B0 1012 aaPredicted RBP8.34□□□□□ -1.07
CSDE1-201ENST00000261443 SIL1Q9H173 461 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 RNF216Q9NWF9 866 aaPredicted RBP8.34□□□□□ -1.07
CSDE1-201ENST00000261443 ARHGAP6O43182 974 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 CBFA2T2O43439 604 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 NBPF7P0C2Y1 421 aaPredicted RBP8.34□□□□□ -1.07
CSDE1-201ENST00000261443 MTHFSDQ2M296 383 aaKnown RBP8.34□□□□□ -1.07
CSDE1-201ENST00000261443 CFAP100Q494V2 611 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 ATL3Q6DD88 541 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 NAA16Q6N069 864 aaPredicted RBP8.34□□□□□ -1.07
CSDE1-201ENST00000261443 SUGP1Q8IWZ8 645 aaKnown RBP8.34□□□□□ -1.07
CSDE1-201ENST00000261443 DHX58Q96C10 678 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 HMG20BQ9P0W2 317 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 RGPD8O14715 1765 aaPredicted RBP8.34□□□□□ -1.07
CSDE1-201ENST00000261443 PTPRUQ92729 1446 aa8.34□□□□□ -1.07
CSDE1-201ENST00000261443 MYH15Q9Y2K3 1946 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 NPHP4O75161 1426 aaPredicted RBP8.33□□□□□ -1.08
CSDE1-201ENST00000261443 SLC3A2P08195 630 aaKnown RBP8.33□□□□□ -1.08
CSDE1-201ENST00000261443 TOP1P11387 765 aaKnown RBP8.33□□□□□ -1.08
CSDE1-201ENST00000261443 ATP1A3P13637 1013 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 NDUFA8P51970 172 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 NLRP12P59046 1061 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 NCAPHQ15003 741 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 HSP90B2PQ58FF3 399 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 NBPF6Q5VWK0 638 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 MCTP2Q6DN12 878 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 LRRC31Q6UY01 552 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 Q6ZUG5 572 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 EFCAB13Q8IY85 973 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 HNRNPLLQ8WVV9 542 aaKnown RBP8.33□□□□□ -1.08
CSDE1-201ENST00000261443 NBPF4Q96M43 638 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 PCDHA7Q9UN72 937 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 AKAP2Q9Y2D5 859 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 PXDNLA1KZ92 1463 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 A0A0D9SFI3 127 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 ERLIN1O75477 346 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 CHMP4BP1P59074 171 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 BEND6Q5SZJ8 279 aaPredicted RBP8.33□□□□□ -1.08
CSDE1-201ENST00000261443 MMS22LQ6ZRQ5 1243 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 CCDC12Q8WUD4 166 aaPredicted RBP8.33□□□□□ -1.08
CSDE1-201ENST00000261443 CCDC102AQ96A19 550 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 NUTM2FA1L443 756 aa8.33□□□□□ -1.08
CSDE1-201ENST00000261443 PRR29P0C7W0 189 aa8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms