RNA–Protein interactions for RNA: ENSMUST00000173369.1

Trim39-205, Transcript of E3 ubiquitin-protein ligase TRIM39, mousemouse

TSL 1 (best) BASIC

Gene Trim39, Length 2,914 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim39-205ENSMUST00000173369 Letm1Q9Z2I0 738 aa10.2□□□□□ -0.78
Trim39-205ENSMUST00000173369 Kiaa0232Q80U59 1396 aaKnown RBP10.2□□□□□ -0.78
Trim39-205ENSMUST00000173369 Abcc4E9Q236 1325 aa10.2□□□□□ -0.78
Trim39-205ENSMUST00000173369 Csrnp1P59054 583 aa10.2□□□□□ -0.78
Trim39-205ENSMUST00000173369 Plekhg6Q8R0J1 787 aa10.2□□□□□ -0.78
Trim39-205ENSMUST00000173369 Stk3Q9JI10 497 aa10.2□□□□□ -0.78
Trim39-205ENSMUST00000173369 Frmpd3A0A140LIW3 1774 aa10.2□□□□□ -0.78
Trim39-205ENSMUST00000173369 Slc4a1P04919 929 aa10.2□□□□□ -0.78
Trim39-205ENSMUST00000173369 CfhP06909 1234 aa10.2□□□□□ -0.78
Trim39-205ENSMUST00000173369 Insm1Q63ZV0 521 aa10.2□□□□□ -0.78
Trim39-205ENSMUST00000173369 Prkrip1Q9CWV6 186 aaKnown RBP10.2□□□□□ -0.78
Trim39-205ENSMUST00000173369 Il1rapl2Q9ERS6 686 aa10.2□□□□□ -0.78
Trim39-205ENSMUST00000173369 Kcna3P16390 528 aa10.19□□□□□ -0.78
Trim39-205ENSMUST00000173369 Plekhf1Q3TB82 279 aa10.19□□□□□ -0.78
Trim39-205ENSMUST00000173369 Plbd2Q3TCN2 594 aa10.19□□□□□ -0.78
Trim39-205ENSMUST00000173369 Noc3lQ8VI84 807 aaKnown RBP10.19□□□□□ -0.78
Trim39-205ENSMUST00000173369 Gtf2iQ9ESZ8 998 aaKnown RBP10.19□□□□□ -0.78
Trim39-205ENSMUST00000173369 Speer4dL7N216 212 aa10.19□□□□□ -0.78
Trim39-205ENSMUST00000173369 Znfx1Q8R151 1909 aaKnown RBP10.18□□□□□ -0.78
Trim39-205ENSMUST00000173369 Glis2Q8VDL9 521 aa10.18□□□□□ -0.78
Trim39-205ENSMUST00000173369 NsmfQ99NF2 532 aa10.18□□□□□ -0.78
Trim39-205ENSMUST00000173369 Bag3Q9JLV1 577 aaKnown RBP10.18□□□□□ -0.78
Trim39-205ENSMUST00000173369 Mbd3Q9Z2D8 285 aaKnown RBP10.18□□□□□ -0.78
Trim39-205ENSMUST00000173369 Tpx2A2APB8 745 aaKnown RBP10.18□□□□□ -0.78
Trim39-205ENSMUST00000173369 Ddx46Q569Z5 1032 aaKnown RBP10.18□□□□□ -0.78
Trim39-205ENSMUST00000173369 SkilQ60665 675 aa10.18□□□□□ -0.78
Trim39-205ENSMUST00000173369 Znf18Q810A1 556 aa10.18□□□□□ -0.78
Trim39-205ENSMUST00000173369 Sept12Q9D451 317 aa10.18□□□□□ -0.78
Trim39-205ENSMUST00000173369 UvssaQ9D479 717 aa10.18□□□□□ -0.78
Trim39-205ENSMUST00000173369 Rhbdl3P58873 404 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 Atp8a2P98200 1148 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 Gsdma2Q32M21 443 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 NfkbibQ60778 359 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 Chmp5Q9D7S9 219 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 Mtmr2Q9Z2D1 643 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 Hmox1P14901 289 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 EspnlQ3UYR4 1005 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 Shtn1Q8K2Q9 631 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 Eddm13E9Q7F5 164 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 Sept1P42209 366 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 AaasP58742 546 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 Gtf3c6Q9D8P7 227 aa10.17□□□□□ -0.78
Trim39-205ENSMUST00000173369 Flt1P35969 1333 aa10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 Ankrd63A2ARS0 390 aa10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 TsksO54887 585 aa10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 SfswapQ3USH5 945 aaKnown RBP10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 Nlrp9aQ66X03 949 aa10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 Best3Q6H1V1 669 aa10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 Ppp4r3aQ6P2K6 820 aa10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 Rbm15bQ6PHZ5 887 aaKnown RBP10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 Golim4Q8BXA1 655 aa10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 Ppp1r21Q3TDD9 780 aa10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 Kiaa0753Q6A000 959 aa10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 Sgip1Q8VD37 806 aa10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 Ciao1Q99KN2 339 aa10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 RarsQ9D0I9 660 aaKnown RBP10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 Cyp46a1Q9WVK8 500 aa10.16□□□□□ -0.78
Trim39-205ENSMUST00000173369 NogP97466 232 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 Prune1Q8BIW1 454 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 Pus3Q9JI38 481 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 Zfp831A2ADM8 1628 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 D830030K20RikE9PYQ5 218 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 Gm3043K7N693 218 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 Gm16440K7N6G6 218 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 Gm2244L7N2A3 218 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 Gm4340L7N2C4 268 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 Gm3278L7N2D2 218 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 Gm8271L7N2E2 218 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 Nlrp1aQ2LKU9 1182 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 Pla2g4fQ50L41 855 aa10.15□□□□□ -0.78
Trim39-205ENSMUST00000173369 Btaf1E9QAE3 1848 aa10.15□□□□□ -0.79
Trim39-205ENSMUST00000173369 TnksQ6PFX9 1320 aa10.15□□□□□ -0.79
Trim39-205ENSMUST00000173369 Zbtb7aO88939 569 aaKnown RBP10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 Rbm27Q5SFM8 1060 aaKnown RBP10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 Cdcp1Q5U462 833 aa10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 Spon1Q8VCC9 807 aa10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 Psmd14O35593 310 aa10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 Ptpdc1Q6NZK8 747 aa10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 Lmod1Q8BVA4 595 aa10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 Kcnq3Q8K3F6 873 aa10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 Tut1Q8R3F9 869 aa10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 Mrpl12Q9DB15 201 aaKnown RBP10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 Spock2Q9ER58 423 aa10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 Plagl1Q9JLQ4 704 aa10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 Mical3Q8CJ19 1993 aa10.14□□□□□ -0.79
Trim39-205ENSMUST00000173369 D1Pas1P16381 660 aa10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 ChgaP26339 463 aaKnown RBP10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 NpeppsQ11011 920 aa10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 Gm5592Q3V0A6 857 aa10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 Fam228bQ497Q6 232 aa10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 Tom1l2Q5SRX1 507 aa10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 Asap2Q7SIG6 958 aa10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 Fam102bQ8BQS4 339 aa10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 Sf3a1Q8K4Z5 791 aaKnown RBP10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 Pet2A2AHY8 747 aa10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 Bend4P86174 541 aa10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 Rnf180Q3U827 592 aa10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 Ift57Q8BXG3 429 aa10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 Cog6Q8R3I3 657 aa10.13□□□□□ -0.79
Trim39-205ENSMUST00000173369 Dcdc2bF7BCK0 340 aa10.13□□□□□ -0.79
Retrieved 100 of 22,080 RNA–protein pairs in 47.4 ms