Protein–RNA interactions for Protein: Q3U827

Rnf180, E3 ubiquitin-protein ligase RNF180, mousemouse

Predictions only

Length 592 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf180Q3U827 Gm25239-201ENSMUST00000174915 86 ntBASIC50.1■■■■■ 5.61
Rnf180Q3U827 Smc2os-201ENSMUST00000141473 626 ntTSL 1 (best) BASIC46.87■■■■■ 5.09
Rnf180Q3U827 1810037I17Rik-201ENSMUST00000106429 1160 ntAPPRIS P1 TSL 1 (best) BASIC46.15■■■■■ 4.98
Rnf180Q3U827 Gm24109-201ENSMUST00000175489 103 ntBASIC44.05■■■■■ 4.64
Rnf180Q3U827 Gm15042-201ENSMUST00000120212 883 ntBASIC42.67■■■■■ 4.42
Rnf180Q3U827 Kdm2a-208ENSMUST00000176483 1128 ntTSL 1 (best) BASIC42.67■■■■■ 4.42
Rnf180Q3U827 Gatad1-202ENSMUST00000119783 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC42.41■■■■■ 4.38
Rnf180Q3U827 Arhgdig-201ENSMUST00000025019 1032 ntAPPRIS P1 TSL 1 (best) BASIC41.99■■■■■ 4.31
Rnf180Q3U827 Kcnmb4-201ENSMUST00000068233 1367 ntAPPRIS P1 TSL 1 (best) BASIC41.92■■■■■ 4.3
Rnf180Q3U827 Gm23366-201ENSMUST00000175022 89 ntBASIC41.75■■■■■ 4.27
Rnf180Q3U827 Gm15045-201ENSMUST00000117359 883 ntBASIC41.46■■■■■ 4.23
Rnf180Q3U827 AC153911.1-202ENSMUST00000218534 1034 ntBASIC41.44■■■■■ 4.22
Rnf180Q3U827 Asmt-201ENSMUST00000178693 1191 ntAPPRIS P1 TSL 1 (best) BASIC41.26■■■■■ 4.2
Rnf180Q3U827 Fgf2-204ENSMUST00000138563 1240 ntAPPRIS P2 TSL 5 BASIC41.19■■■■■ 4.18
Rnf180Q3U827 Fgf18-201ENSMUST00000020507 1086 ntAPPRIS P1 TSL 1 (best) BASIC41.18■■■■■ 4.18
Rnf180Q3U827 Gm20732-201ENSMUST00000175699 686 ntTSL 3 BASIC40.81■■■■■ 4.12
Rnf180Q3U827 Drap1-203ENSMUST00000113674 939 ntTSL 2 BASIC40.14■■■■■ 4.02
Rnf180Q3U827 Pkig-201ENSMUST00000064703 1036 ntAPPRIS P1 TSL 1 (best) BASIC40.11■■■■■ 4.01
Rnf180Q3U827 Cd63-201ENSMUST00000026407 1063 ntAPPRIS P1 TSL 1 (best) BASIC39.95■■■■□ 3.99
Rnf180Q3U827 Gm25238-201ENSMUST00000174914 89 ntBASIC39.89■■■■□ 3.98
Rnf180Q3U827 Rexo2-201ENSMUST00000034524 1077 ntAPPRIS P1 TSL 1 (best) BASIC39.89■■■■□ 3.98
Rnf180Q3U827 Tusc1-201ENSMUST00000066774 1374 ntAPPRIS P1 BASIC39.69■■■■□ 3.94
Rnf180Q3U827 Syce2-204ENSMUST00000170296 929 ntAPPRIS ALT2 TSL 2 BASIC39.16■■■■□ 3.86
Rnf180Q3U827 Crk-202ENSMUST00000093115 965 ntTSL 1 (best) BASIC39.15■■■■□ 3.86
Rnf180Q3U827 Tmem240-201ENSMUST00000127188 1308 ntAPPRIS P1 TSL 2 BASIC39.07■■■■□ 3.84
Rnf180Q3U827 Gm25262-201ENSMUST00000174934 133 ntBASIC38.9■■■■□ 3.82
Rnf180Q3U827 Mapk3-201ENSMUST00000050201 1267 ntAPPRIS ALT2 TSL 3 BASIC38.77■■■■□ 3.8
Rnf180Q3U827 Crk-204ENSMUST00000108426 671 ntTSL 3 BASIC38.55■■■■□ 3.76
Rnf180Q3U827 B430219N15Rik-202ENSMUST00000180853 1105 ntBASIC38.48■■■■□ 3.75
Rnf180Q3U827 Gm26115-201ENSMUST00000175605 87 ntBASIC38.44■■■■□ 3.74
Rnf180Q3U827 BC030336-205ENSMUST00000208454 813 ntTSL 2 BASIC38.36■■■■□ 3.73
Rnf180Q3U827 Rnf149-204ENSMUST00000195705 389 ntTSL 3 BASIC38.19■■■■□ 3.7
Rnf180Q3U827 Olfm1-203ENSMUST00000102879 1072 ntTSL 1 (best) BASIC38.07■■■■□ 3.68
Rnf180Q3U827 Kctd9-204ENSMUST00000150768 1302 ntAPPRIS P1 TSL 5 BASIC38.01■■■■□ 3.68
Rnf180Q3U827 Gm8109-201ENSMUST00000194076 746 ntBASIC37.98■■■■□ 3.67
Rnf180Q3U827 Tprgl-202ENSMUST00000105639 642 ntTSL 5 BASIC37.9■■■■□ 3.66
Rnf180Q3U827 Ankrd40-202ENSMUST00000051221 1477 ntAPPRIS ALT2 TSL 1 (best) BASIC37.8■■■■□ 3.64
Rnf180Q3U827 Bcl7c-201ENSMUST00000061468 1132 ntAPPRIS P1 TSL 1 (best) BASIC37.78■■■■□ 3.64
Rnf180Q3U827 Drap1-201ENSMUST00000025853 992 ntAPPRIS P1 TSL 1 (best) BASIC37.63■■■■□ 3.61
Rnf180Q3U827 Ppp2cb-201ENSMUST00000009774 1469 ntAPPRIS P1 TSL 1 (best) BASIC37.59■■■■□ 3.61
Rnf180Q3U827 Ctdnep1-201ENSMUST00000108593 1627 ntAPPRIS P1 TSL 1 (best) BASIC37.39■■■■□ 3.58
Rnf180Q3U827 Glrx5-203ENSMUST00000223244 793 ntTSL 5 BASIC37.36■■■■□ 3.57
Rnf180Q3U827 Rhno1-201ENSMUST00000057421 1584 ntAPPRIS P1 TSL 1 (best) BASIC37.36■■■■□ 3.57
Rnf180Q3U827 Rab21-202ENSMUST00000218831 843 ntBASIC37.3■■■■□ 3.56
Rnf180Q3U827 Maz-202ENSMUST00000205461 796 ntTSL 5 BASIC37.29■■■■□ 3.56
Rnf180Q3U827 Fam220a-203ENSMUST00000118121 919 ntTSL 1 (best) BASIC37.19■■■■□ 3.54
Rnf180Q3U827 Gm27325-201ENSMUST00000175467 74 ntBASIC37.17■■■■□ 3.54
Rnf180Q3U827 Gsx2-202ENSMUST00000160104 1182 ntTSL 1 (best) BASIC37.04■■■■□ 3.52
Rnf180Q3U827 Svbp-202ENSMUST00000097908 832 ntTSL 2 BASIC36.91■■■■□ 3.5
Rnf180Q3U827 Necab2-201ENSMUST00000098363 1976 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
Rnf180Q3U827 Ybx2-201ENSMUST00000018698 1673 ntAPPRIS P3 TSL 1 (best) BASIC36.75■■■■□ 3.47
Rnf180Q3U827 Crebl2-202ENSMUST00000111937 612 ntTSL 3 BASIC36.69■■■■□ 3.46
Rnf180Q3U827 Tmed7-203ENSMUST00000151189 1348 ntAPPRIS P1 TSL 1 (best) BASIC36.66■■■■□ 3.46
Rnf180Q3U827 Fam122a-201ENSMUST00000099556 855 ntAPPRIS P1 BASIC36.65■■■■□ 3.46
Rnf180Q3U827 B330016D10Rik-201ENSMUST00000049927 1701 ntBASIC36.65■■■■□ 3.46
Rnf180Q3U827 Gm24804-201ENSMUST00000174982 85 ntBASIC36.62■■■■□ 3.45
Rnf180Q3U827 Khdrbs3-201ENSMUST00000022954 1887 ntAPPRIS P1 TSL 1 (best) BASIC36.6■■■■□ 3.45
Rnf180Q3U827 Mbd2-202ENSMUST00000114946 1290 ntTSL 1 (best) BASIC36.55■■■■□ 3.44
Rnf180Q3U827 Enho-201ENSMUST00000127306 1269 ntAPPRIS P1 TSL 1 (best) BASIC36.54■■■■□ 3.44
Rnf180Q3U827 Hoxd8-202ENSMUST00000074721 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC36.53■■■■□ 3.44
Rnf180Q3U827 Cacng8-201ENSMUST00000092351 1380 ntAPPRIS P1 TSL 1 (best) BASIC36.53■■■■□ 3.44
Rnf180Q3U827 Cacng8-202ENSMUST00000182222 1897 ntAPPRIS P1 TSL 5 BASIC36.52■■■■□ 3.44
Rnf180Q3U827 B3gat3-201ENSMUST00000096243 1601 ntAPPRIS P1 TSL 1 (best) BASIC36.41■■■■□ 3.42
Rnf180Q3U827 4930537H20Rik-201ENSMUST00000200437 1683 ntBASIC36.31■■■■□ 3.4
Rnf180Q3U827 Gm17082-201ENSMUST00000166043 1091 ntBASIC36.26■■■■□ 3.4
Rnf180Q3U827 Rnf126-201ENSMUST00000047203 1639 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
Rnf180Q3U827 Pradc1-201ENSMUST00000032080 1038 ntAPPRIS P1 TSL 1 (best) BASIC36.2■■■■□ 3.39
Rnf180Q3U827 Gm8066-201ENSMUST00000197762 485 ntTSL 3 BASIC36.18■■■■□ 3.38
Rnf180Q3U827 Rpl19-ps4-201ENSMUST00000167150 625 ntBASIC36.14■■■■□ 3.38
Rnf180Q3U827 Zfp131-205ENSMUST00000223812 663 ntBASIC36.13■■■■□ 3.37
Rnf180Q3U827 Gpr137c-202ENSMUST00000147957 1395 ntAPPRIS ALT2 TSL 1 (best) BASIC36.13■■■■□ 3.37
Rnf180Q3U827 Trnp1-202ENSMUST00000125541 1654 ntAPPRIS P1 TSL 1 (best) BASIC36.04■■■■□ 3.36
Rnf180Q3U827 Ino80b-201ENSMUST00000032109 1038 ntAPPRIS P2 TSL 1 (best) BASIC35.99■■■■□ 3.35
Rnf180Q3U827 Snf8-202ENSMUST00000107700 849 ntTSL 2 BASIC35.98■■■■□ 3.35
Rnf180Q3U827 Gtf2a2-203ENSMUST00000119413 1034 ntAPPRIS P1 TSL 1 (best) BASIC35.97■■■■□ 3.35
Rnf180Q3U827 Pabpn1-201ENSMUST00000022808 1030 ntAPPRIS P2 TSL 1 (best) BASIC35.97■■■■□ 3.35
Rnf180Q3U827 Pard6a-205ENSMUST00000212430 1261 ntAPPRIS ALT1 TSL 1 (best) BASIC35.94■■■■□ 3.34
Rnf180Q3U827 Ino80b-202ENSMUST00000113935 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC35.91■■■■□ 3.34
Rnf180Q3U827 Clec2l-201ENSMUST00000114874 1428 ntAPPRIS P1 TSL 2 BASIC35.87■■■■□ 3.33
Rnf180Q3U827 Gm27322-201ENSMUST00000184007 104 ntBASIC35.83■■■■□ 3.33
Rnf180Q3U827 Sh3glb2-214ENSMUST00000163668 1733 ntTSL 5 BASIC35.83■■■■□ 3.33
Rnf180Q3U827 AI837181-202ENSMUST00000159759 1515 ntAPPRIS P1 TSL 1 (best) BASIC35.82■■■■□ 3.32
Rnf180Q3U827 Gltp-203ENSMUST00000112214 944 ntTSL 3 BASIC35.8■■■■□ 3.32
Rnf180Q3U827 Plekho1-201ENSMUST00000015889 1931 ntAPPRIS P1 TSL 1 (best) BASIC35.79■■■■□ 3.32
Rnf180Q3U827 Ubtd2-201ENSMUST00000051053 1012 ntAPPRIS P1 TSL 1 (best) BASIC35.76■■■■□ 3.32
Rnf180Q3U827 Il17d-201ENSMUST00000089494 1274 ntAPPRIS P1 TSL 1 (best) BASIC35.74■■■■□ 3.31
Rnf180Q3U827 Tcf15-201ENSMUST00000089112 980 ntAPPRIS P1 TSL 1 (best) BASIC35.69■■■■□ 3.3
Rnf180Q3U827 Sap30l-201ENSMUST00000020826 1151 ntAPPRIS P1 TSL 1 (best) BASIC35.63■■■■□ 3.29
Rnf180Q3U827 Tmed7-201ENSMUST00000036030 1436 ntTSL 5 BASIC35.61■■■■□ 3.29
Rnf180Q3U827 Nkx1-1-201ENSMUST00000173348 1209 ntAPPRIS P1 TSL 5 BASIC35.57■■■■□ 3.28
Rnf180Q3U827 Dnttip1-202ENSMUST00000109326 476 ntTSL 1 (best) BASIC35.46■■■■□ 3.27
Rnf180Q3U827 1700069B07Rik-202ENSMUST00000191155 939 ntBASIC35.46■■■■□ 3.27
Rnf180Q3U827 Mapk13-201ENSMUST00000004986 1392 ntAPPRIS P1 TSL 1 (best) BASIC35.46■■■■□ 3.27
Rnf180Q3U827 Mkrn1-203ENSMUST00000114822 751 ntTSL 1 (best) BASIC35.44■■■■□ 3.26
Rnf180Q3U827 Nrgn-201ENSMUST00000065668 1453 ntAPPRIS P1 TSL 1 (best) BASIC35.39■■■■□ 3.26
Rnf180Q3U827 Vps37d-201ENSMUST00000067935 1544 ntAPPRIS P1 TSL 1 (best) BASIC35.36■■■■□ 3.25
Rnf180Q3U827 Gm12339-201ENSMUST00000127424 728 ntTSL 3 BASIC35.35■■■■□ 3.25
Rnf180Q3U827 Yif1b-202ENSMUST00000108237 1086 ntTSL 5 BASIC35.34■■■■□ 3.25
Rnf180Q3U827 Lsm4-204ENSMUST00000210071 575 ntTSL 5 BASIC35.32■■■■□ 3.24
Rnf180Q3U827 Bzw1-202ENSMUST00000186949 1492 ntTSL 5 BASIC35.29■■■■□ 3.24
Retrieved 100 of 76,532 protein–RNA pairs in 12.3 ms