RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 MRPL15Q9P015 296 aaKnown RBP13.78□□□□□ -0.2
PRPF40A-212ENST00000545856 CMAHPQ9Y471 501 aa13.78□□□□□ -0.2
PRPF40A-212ENST00000545856 COL12A1Q99715 3063 aa13.78□□□□□ -0.2
PRPF40A-212ENST00000545856 FASNP49327 2511 aaKnown RBP13.78□□□□□ -0.2
PRPF40A-212ENST00000545856 TRBV5-7A0A0A0MS05 114 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 ZNF816-ZNF321PA0A0X1KG74 233 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 PNMA8CA0A1B0GUJ8 204 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 IQCF6A8MYZ5 107 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 GABRPO00591 440 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 IGHV3-13P01766 116 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 FAM157BP0CG42 384 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 ALKBH2Q6NS38 261 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 SERPINA12Q8IW75 414 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 OR13C3Q8NGS6 347 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 SLC25A40Q8TBP6 338 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 KLF14Q8TD94 323 aaPredicted RBP13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 TMEM171Q8WVE6 324 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 TMIGD2Q96BF3 282 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 CPNE2Q96FN4 548 aaPredicted RBP13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 KCTD7Q96MP8 289 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 DERL3Q96Q80 235 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 OR2J1Q9GZK6 312 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 CHST5Q9GZS9 411 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 SLITRK2Q9H156 845 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 FOXJ3Q9UPW0 622 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 ICE1Q9Y2F5 2266 aa13.77□□□□□ -0.21
PRPF40A-212ENST00000545856 TRAV1-2A0A0B4J238 106 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 MEGF11A6BM72 1044 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 GGT3PA6NGU5 568 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 CD300LBA8K4G0 201 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 C19orf84I3L1E1 186 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 SLC22A1O15245 554 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 CST4P01036 141 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 ERCC1P07992 297 aaPredicted RBP13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 ZNF20P17024 532 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 GADD45AP24522 165 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 LOXP28300 417 aaPredicted RBP13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 PSMD7P51665 324 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 KLF3P57682 345 aaPredicted RBP13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 FABP5Q01469 135 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 CLVS1Q8IUQ0 354 aaPredicted RBP13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 CDH26Q8IXH8 852 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 OR5D14Q8NGL3 314 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 OR2AE1Q8NHA4 323 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 SYNPRQ8TBG9 265 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 MRPL24Q96A35 216 aaKnown RBP13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 LYZL4Q96KX0 146 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 FAIMQ9NVQ4 179 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 PTTG3PQ9NZH4 202 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 POU2F3Q9UKI9 436 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 N6AMT1Q9Y5N5 214 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 MPC1Q9Y5U8 109 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 PTPN13Q12923 2485 aa13.76□□□□□ -0.21
PRPF40A-212ENST00000545856 A0A1B0GWJ7 208 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 FAM221AA4D161 298 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 A6NNC1 897 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 SHISA9B4DS77 424 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 MYL9P24844 172 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 GNALP38405 381 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 MZT1Q08AG7 82 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 EFNB3Q15768 340 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 GFOD2Q3B7J2 385 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 HSD17B12Q53GQ0 312 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 TMEM42Q69YG0 159 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 TMEM91Q6ZNR0 172 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 CEACAM19Q7Z692 300 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 TPRA1Q86W33 373 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 NKAIN3Q8N8D7 197 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 SPERTQ8NA61 448 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 KBTBD8Q8NFY9 601 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 TMEM203Q969S6 136 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 PPP1R14AQ96A00 147 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 SPSB1Q96BD6 273 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 FAM71F1Q96KD3 344 aaPredicted RBP13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 OR14A2Q96R54 314 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 DHRS9Q9BPW9 319 aa13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 RBM38Q9H0Z9 239 aaKnown RBP13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 TXNL4BQ9NX01 149 aaKnown RBP13.75□□□□□ -0.21
PRPF40A-212ENST00000545856 ANKRD30BLA7E2S9 258 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 RNF224P0DH78 156 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 APOBEC3AP31941 199 aaPredicted RBP13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 MTNR1BP49286 362 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 PPP3R1P63098 170 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 CNN3Q15417 329 aaKnown RBP13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 ODF4Q2M2E3 257 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 ZNF672Q499Z4 452 aaPredicted RBP13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 FAM209AQ5JX71 171 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 CLVS2Q5SYC1 327 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 GPR107Q5VW38 600 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 ZNF529Q6P280 563 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 SLC16A12Q6ZSM3 486 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 CROCCP3Q8IVE0 287 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 RDH10Q8IZV5 341 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 DNAAF1Q8NEP3 725 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 OR56B2PQ8NGI1 322 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 OR51A4Q8NGJ6 313 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 DGCR14Q96DF8 476 aaKnown RBP13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 CMBLQ96DG6 245 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 PIK3IP1Q96FE7 263 aa13.74□□□□□ -0.21
PRPF40A-212ENST00000545856 DIRC2Q96SL1 478 aa13.74□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms