RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ZBTB25P24278 435 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 RPS18P62269 152 aaKnown RBP18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 DMRTC1Q5HYR2 192 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 PPP1R32Q7Z5V6 425 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 ZDHHC22Q8N966 263 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 LIN37Q96GY3 246 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 SGCZQ96LD1 299 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 ARL6Q9H0F7 186 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 SMOC1Q9H4F8 434 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 ZNF230Q9UIE0 474 aaPredicted RBP18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 TRAV14DV4A0A0A6YYC5 116 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 TUBAL3A6NHL2 446 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 RFPL4AA6NLU0 287 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 B4E171 279 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 RFPL4AL1F8VTS6 287 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 STK17BO94768 372 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 CD34P28906 385 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 TSPAN7P41732 249 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 TMEM50BP56557 158 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 B3GALT5-AS1P59052 145 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 Q0VFX4 171 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 DTX1Q86Y01 620 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 RAB3CQ96E17 227 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 GPER1Q99527 375 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 TMEM59Q9BXS4 323 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 CST11Q9H112 138 aa18.31■□□□□ 0.52
CCDC88B-203ENST00000359902 A0A0G2JMM0 328 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 A0A0U1RQV5 110 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 A0A1W2PPB8 328 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 A0A1W2PRS3 328 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 OR2AT4A6NND4 320 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 KIR3DP1A8MWS1 328 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 IGHEP01854 428 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 GSTP1P09211 210 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 TBPP20226 339 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 SLC6A9P48067 706 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 ECH1Q13011 328 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 CRIP3Q6Q6R5 217 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 CCDC28AQ8IWP9 274 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 OR5M8Q8NGP6 311 aa18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 INTS12Q96CB8 462 aaKnown RBP18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 ZNF837Q96EG3 531 aaPredicted RBP18.3■□□□□ 0.52
CCDC88B-203ENST00000359902 RP2O75695 350 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 PDGFAP04085 211 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 PRF1P14222 555 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 HIST1H1DP16402 221 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 OTX1P32242 354 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 AP2S1P53680 142 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 SRSF4Q08170 494 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 LYG2Q86SG7 212 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 NAXDQ8IW45 347 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 C20orf196Q8IYI0 205 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 KIF25Q9UIL4 384 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 NOP16Q9Y3C1 178 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 V9GYS6 101 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 SMAD9O15198 467 aaKnown RBP18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 CD8AP01732 235 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 PMP2P02689 132 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 GP1BAP07359 652 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 RPA2P15927 270 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 OTX2P32243 289 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 PPP1R1AQ13522 171 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 BEST3Q8N1M1 668 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 ZNF775Q96BV0 537 aaPredicted RBP18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 CYYR1Q96J86 154 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 ULBP2Q9BZM5 246 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 PADI1Q9ULC6 663 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 ANAPC10Q9UM13 185 aa18.29■□□□□ 0.52
CCDC88B-203ENST00000359902 ZSCAN5BA6NJL1 495 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 GJE1A6NN92 205 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 CRTAPO75718 401 aaPredicted RBP18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 B3GALNT1O75752 331 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 IL2RAP01589 272 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 UBBP0CG47 229 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 KISS1Q15726 138 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 DCAF12Q5T6F0 453 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 YRDCQ86U90 279 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 OR4K15Q8NH41 348 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 FBXO17Q96EF6 278 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 MFFQ9GZY8 342 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 FN3KRPQ9HA64 309 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 ZNF224Q9NZL3 707 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 TCFL5Q9UL49 500 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 C9orf170A2RU37 121 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 RAD51DO75771 328 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 DHRS3O75911 302 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 P04436 131 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 IFNA6P05013 189 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 NAT1P18440 290 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 ACP1P24666 158 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 SRD5A2P31213 254 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 THBS4P35443 961 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 RAC3P60763 192 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 CHAF1BQ13112 559 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 EIF3IQ13347 325 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 LPAL2Q16609 132 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 AANATQ16613 207 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 C1QL2Q7Z5L3 287 aa18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 SF3B5Q9BWJ5 86 aaKnown RBP18.28■□□□□ 0.52
CCDC88B-203ENST00000359902 RTTNQ86VV8 2226 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms