RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 ATG4DQ86TL0 474 aaPredicted RBP11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 BCORP1Q8N888 145 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 OR9K2Q8NGE7 335 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 OR9A4Q8NGU2 314 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 VSTM2LQ96N03 204 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 GNRHR2Q96P88 292 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 FOXQ1Q9C009 403 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 PPP1R14DQ9NXH3 145 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 GAR1Q9NY12 217 aaKnown RBP11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 WASF3Q9UPY6 502 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 RHBDD3Q9Y3P4 386 aa11.97□□□□□ -0.49
CCDC88C-201ENST00000331194 LINC01553A4QN01 128 aa11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 SOCS1O15524 211 aa11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 SCGB1D2O95969 90 aa11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 CDX1P47902 265 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 ZNF141Q15928 474 aa11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 SLC18B1Q6NT16 456 aa11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 CA13Q8N1Q1 262 aa11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 POC1AQ8NBT0 407 aa11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 OR56B1Q8NGI3 324 aa11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 FLVCR1-AS1Q8TAF5 88 aa11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 BANF2Q9H503 90 aa11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 PHPT1Q9NRX4 125 aaPredicted RBP11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 LSM5Q9Y4Y9 91 aaKnown RBP11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 SPAG17Q6Q759 2223 aa11.96□□□□□ -0.49
CCDC88C-201ENST00000331194 SLC31A1O15431 190 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 IFNA17P01571 189 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 PMELP40967 661 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 RBP2P50120 134 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 INSM1Q01101 510 aaPredicted RBP11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 ANKRD39Q53RE8 183 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 AGBL4Q5VU57 503 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 MRPL43Q8N983 215 aaKnown RBP11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 UBAC2Q8NBM4 344 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 SPPL3Q8TCT6 385 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 SLC39A7Q92504 469 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 C8orf44Q96CB5 159 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 C2orf50Q96LR7 162 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 SH3BGRL3Q9H299 93 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 TUBA4BQ9H853 241 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 RAB22AQ9UL26 194 aa11.96□□□□□ -0.5
CCDC88C-201ENST00000331194 A0A0A6YYD4 124 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 RAD51DO75771 328 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 LYL1P12980 280 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 ZNF84P51523 738 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 PPP1CAP62136 330 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 BTG2P78543 158 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 TOMM34Q15785 309 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 PHF19Q5T6S3 580 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 EIF5AL1Q6IS14 154 aaKnown RBP11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 HEPN1Q6WQI6 88 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 PATE1Q8WXA2 126 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 CPNE4Q96A23 557 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 RTN4RQ9BZR6 473 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 RAB18Q9NP72 206 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 DEC1Q9P2X7 70 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 CA14Q9ULX7 337 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 HHLA2Q9UM44 414 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 K7EPK0 472 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 XKRYO14609 159 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 CST4P01036 141 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 SOD3P08294 240 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 CXCL1P09341 107 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 THBS4P35443 961 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 ASCL1P50553 236 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 RSU1Q15404 277 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 ZNF674Q2M3X9 581 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 PLAC9Q5JTB6 97 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 FDX2Q6P4F2 183 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 HIST2H3AQ71DI3 136 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 FAM71E2Q8N5Q1 922 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 ASB16Q96NS5 453 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 CDC6Q99741 560 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 ST6GALNAC5Q9BVH7 336 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 OPA3Q9H6K4 179 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 CENPMQ9NSP4 180 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 GFOD1Q9NXC2 390 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 ZNF107Q9UII5 783 aaPredicted RBP11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 HDGFL3Q9Y3E1 203 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 MASP2O00187 686 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 CLDN4O14493 209 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 PPM1AP35813 382 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 C1orf100Q5SVJ3 147 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 LYPD6Q86Y78 171 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 C16orf52Q8NHV5 167 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 NEU1Q99519 415 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 TIMM29Q9BSF4 260 aa11.95□□□□□ -0.5
CCDC88C-201ENST00000331194 ZNF264O43296 627 aa11.94□□□□□ -0.5
CCDC88C-201ENST00000331194 TXNDC12O95881 172 aa11.94□□□□□ -0.5
CCDC88C-201ENST00000331194 PPP1CCP36873 323 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-201ENST00000331194 GABRA4P48169 554 aa11.94□□□□□ -0.5
CCDC88C-201ENST00000331194 LSM6P62312 80 aaKnown RBP11.94□□□□□ -0.5
CCDC88C-201ENST00000331194 RAP1AP62834 184 aa11.94□□□□□ -0.5
CCDC88C-201ENST00000331194 ACY1Q03154 408 aa11.94□□□□□ -0.5
CCDC88C-201ENST00000331194 ACKR1Q16570 336 aa11.94□□□□□ -0.5
CCDC88C-201ENST00000331194 IAH1Q2TAA2 248 aaPredicted RBP11.94□□□□□ -0.5
CCDC88C-201ENST00000331194 C14orf28Q4W4Y0 310 aa11.94□□□□□ -0.5
CCDC88C-201ENST00000331194 C1orf53Q5VUE5 145 aa11.94□□□□□ -0.5
CCDC88C-201ENST00000331194 ZNF529Q6P280 563 aa11.94□□□□□ -0.5
CCDC88C-201ENST00000331194 VITQ6UXI7 678 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms