RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 CFPP27918 469 aa18.44■□□□□ 0.54
VPS28-212ENST00000530836 THBS2P35442 1172 aa18.44■□□□□ 0.54
VPS28-212ENST00000530836 PPP5CP53041 499 aa18.44■□□□□ 0.54
VPS28-212ENST00000530836 GSG1Q2KHT4 349 aa18.44■□□□□ 0.54
VPS28-212ENST00000530836 TBRG1Q3YBR2 411 aa18.44■□□□□ 0.54
VPS28-212ENST00000530836 Q6ZSR3 168 aa18.44■□□□□ 0.54
VPS28-212ENST00000530836 BTLAQ7Z6A9 289 aa18.44■□□□□ 0.54
VPS28-212ENST00000530836 SLC7A6Q92536 515 aa18.44■□□□□ 0.54
VPS28-212ENST00000530836 ORAI1Q96D31 301 aa18.44■□□□□ 0.54
VPS28-212ENST00000530836 ZNF319Q9P2F9 582 aa18.44■□□□□ 0.54
VPS28-212ENST00000530836 USP9XQ93008 2570 aaPredicted RBP18.44■□□□□ 0.54
VPS28-212ENST00000530836 CIB4A0PJX0 185 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 DHRS7CA6NNS2 312 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 H3BSH0 61 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 TBX1O43435 398 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 ZG16O60844 167 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 ZNF20P17024 532 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 RANBP1P43487 201 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 UBE2NP61088 152 aaKnown RBP18.43■□□□□ 0.54
VPS28-212ENST00000530836 SLC25A35Q3KQZ1 300 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 PGAP1Q75T13 922 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 LAX1Q8IWV1 398 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 GABRG1Q8N1C3 465 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 C17orf78Q8N4C9 275 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 NKAIN3Q8N8D7 197 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 ITFG2Q969R8 447 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 CMTM3Q96MX0 182 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 B3GNT2Q9NY97 397 aa18.43■□□□□ 0.54
VPS28-212ENST00000530836 A0A0G2JNJ9 132 aa18.42■□□□□ 0.54
VPS28-212ENST00000530836 MAS1P04201 325 aa18.42■□□□□ 0.54
VPS28-212ENST00000530836 HOXC12P31275 282 aa18.42■□□□□ 0.54
VPS28-212ENST00000530836 SCAND1P57086 179 aa18.42■□□□□ 0.54
VPS28-212ENST00000530836 GABRA6Q16445 453 aa18.42■□□□□ 0.54
VPS28-212ENST00000530836 HIKESHIQ53FT3 197 aa18.42■□□□□ 0.54
VPS28-212ENST00000530836 GLT8D1Q68CQ7 371 aa18.42■□□□□ 0.54
VPS28-212ENST00000530836 NAA40Q86UY6 237 aa18.42■□□□□ 0.54
VPS28-212ENST00000530836 CPEB3Q8NE35 698 aaKnown RBP18.42■□□□□ 0.54
VPS28-212ENST00000530836 FGGYQ96C11 551 aa18.42■□□□□ 0.54
VPS28-212ENST00000530836 C1QTNF5Q9BXJ0 243 aa18.42■□□□□ 0.54
VPS28-212ENST00000530836 Q9UFV3 132 aa18.42■□□□□ 0.54
VPS28-212ENST00000530836 DHRS3O75911 302 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 LCATP04180 440 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 ERCC1P07992 297 aaPredicted RBP18.41■□□□□ 0.54
VPS28-212ENST00000530836 ADRA2CP18825 462 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 ATF1P18846 271 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 STOMP27105 288 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 DDOSTP39656 456 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 SFRP5Q5T4F7 317 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 METAP1DQ6UB28 335 aaPredicted RBP18.41■□□□□ 0.54
VPS28-212ENST00000530836 LRRC28Q86X40 367 aaPredicted RBP18.41■□□□□ 0.54
VPS28-212ENST00000530836 OR1J2Q8NGS2 313 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 SSC4DQ8WTU2 575 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 FOXRED1Q96CU9 486 aaPredicted RBP18.41■□□□□ 0.54
VPS28-212ENST00000530836 GFI1Q99684 422 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 MIXL1Q9H2W2 232 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 PLEKHA1Q9HB21 404 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 OBP2BQ9NPH6 170 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 TAS2R4Q9NYW5 299 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 V9GYS6 101 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 XRCC2O43543 280 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 CALCBP10092 127 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 CD37P11049 281 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 AGAP20933 346 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 PTBP1P26599 531 aaKnown RBP eCLIP18.41■□□□□ 0.54
VPS28-212ENST00000530836 APLNRP35414 380 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 GNALP38405 381 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 C16orf87Q6PH81 154 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 XKRXQ6PP77 449 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 COLCA1Q6ZS62 124 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 MRGPRGQ86SM5 289 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 NAXEQ8NCW5 288 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 OR14K1Q8NGZ2 314 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 TRMT10AQ8TBZ6 339 aaKnown RBP18.41■□□□□ 0.54
VPS28-212ENST00000530836 ITLN2Q8WWU7 325 aaPredicted RBP18.41■□□□□ 0.54
VPS28-212ENST00000530836 DIRAS2Q96HU8 199 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 FAM71F1Q96KD3 344 aaPredicted RBP18.41■□□□□ 0.54
VPS28-212ENST00000530836 COQ3Q9NZJ6 369 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 SPATA2Q9UM82 520 aa18.41■□□□□ 0.54
VPS28-212ENST00000530836 RAD51DO75771 328 aa18.4■□□□□ 0.54
VPS28-212ENST00000530836 RNF224P0DH78 156 aa18.4■□□□□ 0.54
VPS28-212ENST00000530836 SLC2A2P11168 524 aaPredicted RBP18.4■□□□□ 0.54
VPS28-212ENST00000530836 OPRM1P35372 400 aa18.4■□□□□ 0.54
VPS28-212ENST00000530836 GFOD2Q3B7J2 385 aa18.4■□□□□ 0.54
VPS28-212ENST00000530836 C1QTNF12Q5T7M4 302 aa18.4■□□□□ 0.54
VPS28-212ENST00000530836 ASPHD2Q6ICH7 369 aa18.4■□□□□ 0.54
VPS28-212ENST00000530836 ZNF808Q8N4W9 903 aaPredicted RBP18.4■□□□□ 0.54
VPS28-212ENST00000530836 ZNF610Q8N9Z0 462 aa18.4■□□□□ 0.54
VPS28-212ENST00000530836 ZNF671Q8TAW3 534 aa18.4■□□□□ 0.54
VPS28-212ENST00000530836 PP6455Q8WZ26 134 aa18.4■□□□□ 0.54
VPS28-212ENST00000530836 AKAP1Q92667 903 aaKnown RBP eCLIP18.4■□□□□ 0.54
VPS28-212ENST00000530836 SGK3Q96BR1 496 aa18.4■□□□□ 0.54
VPS28-212ENST00000530836 PIGMQ9H3S5 423 aa18.4■□□□□ 0.54
VPS28-212ENST00000530836 MOV10Q9HCE1 1003 aaKnown RBP18.4■□□□□ 0.54
VPS28-212ENST00000530836 TMEM138Q9NPI0 162 aa18.4■□□□□ 0.54
VPS28-212ENST00000530836 DIDO1Q9BTC0 2240 aaKnown RBP18.4■□□□□ 0.54
VPS28-212ENST00000530836 HPGDSO60760 199 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 LYZL6O75951 148 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 SERPINA5P05154 406 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 RAB3AP20336 220 aa18.39■□□□□ 0.53
VPS28-212ENST00000530836 EVX1P49640 407 aa18.39■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms